Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B11
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    30   2.7  
Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    29   3.5  
AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/80 (27%), Positives = 30/80 (37%)
 Frame = +2

Query: 479 EQKASKRPGTVKRPRCWRFSIGSAPLXEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRS 658
           +QK  +R   +  P     SI   P   HH ++    +   P     Y + PP     R 
Sbjct: 436 QQKLYERSHGMTSPVPIMESISPQPQVSHHHHQPQQHQQHQPQQQ-YYPSPPPPPQPYRD 494

Query: 659 PAPXFRPLXAYRNTLXRPFS 718
           P P F P+  Y     RP S
Sbjct: 495 PEPVFNPVQVYET---RPIS 511


>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 534 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 430
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 534 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 430
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 534 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 430
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 425 GGNTVIHRIRGITQERTCEQKASKRPGTVK 514
           GG +V +R   + Q+++   ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,190,052
Number of Sequences: 27780
Number of extensions: 362436
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)