Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B11
         (917 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to...    29   4.3  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.7  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.7  
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    29   5.7  
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    29   5.7  
At3g19830.1 68416.m02512 C2 domain-containing protein low simila...    29   5.7  
At4g02130.2 68417.m00285 glycosyl transferase family 8 protein l...    28   7.5  
At4g02130.1 68417.m00284 glycosyl transferase family 8 protein l...    28   7.5  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.5  
At2g44760.1 68415.m05571 expressed protein                             28   7.5  
At5g20380.1 68418.m02424 transporter-related low similarity to v...    28   10.0 

>At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 356

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = -3

Query: 534 KRQQRGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAA 397
           +R++R  FT   +LLA  S +L  VIP IL IT L   S     AA
Sbjct: 54  QRKKRPEFTCRLMLLALLSGLLGVVIPSILTITGLALTSATFTSAA 99


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 355  PLPRSLTRCARSFGCGERYQLTQRR 429
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 355  PLPRSLTRCARSFGCGERYQLTQRR 429
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 501  GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 403
            GL L F S +LS  IPL++ ITV    +E++ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 501  GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 403
            GL L F S +LS  IPL++ ITV    +E++ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At3g19830.1 68416.m02512 C2 domain-containing protein low
           similarity to GLUT4 vesicle protein [Rattus norvegicus]
           GI:4193489; contains Pfam profile PF00168: C2 domain
          Length = 666

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 494 KRPGTVKRPRCWRFSIGSAPLXEHHKNRRSSQR 592
           K+P  V+R    +FS+G  PL   +  RR+S+R
Sbjct: 238 KKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRR 270


>At4g02130.2 68417.m00285 glycosyl transferase family 8 protein low
           similarity to lgtC of Neisseria sp., GenBank accession
           number U14554, U65788; contains Pfam glycosyl
           transferase family 8 domain PF01501
          Length = 346

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 623 QAFPPGSSLVRSPAPXFRPLXAYRNTLXRPFSLSGKRGAFLISHAV 760
           Q+FPP +++  SP+P FR   A  N      S  G     L+  A+
Sbjct: 25  QSFPPAAAIRSSPSPIFRKAPAVFNNGDECLSSGGVCNPSLVHVAI 70


>At4g02130.1 68417.m00284 glycosyl transferase family 8 protein low
           similarity to lgtC of Neisseria sp., GenBank accession
           number U14554, U65788; contains Pfam glycosyl
           transferase family 8 domain PF01501
          Length = 346

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 623 QAFPPGSSLVRSPAPXFRPLXAYRNTLXRPFSLSGKRGAFLISHAV 760
           Q+FPP +++  SP+P FR   A  N      S  G     L+  A+
Sbjct: 25  QSFPPAAAIRSSPSPIFRKAPAVFNNGDECLSSGGVCNPSLVHVAI 70


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 346 PIRKPPLPARWPIH*CRKNLPHL 278
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At2g44760.1 68415.m05571 expressed protein 
          Length = 504

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 743 ERRHASPKGRKAGXRYSGKRXG 678
           ++R   PKGRK+G R  G R G
Sbjct: 99  DKRKVKPKGRKSGKRLGGGRKG 120


>At5g20380.1 68418.m02424 transporter-related low similarity to
           vesicular glutamate transporter 3 [Rattus norvegicus]
           GI:21685382
          Length = 517

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 519 GLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAAAER 388
           G +T    L  + S  LS  +    W+++LPPL+ ++  + A +
Sbjct: 332 GHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,364,872
Number of Sequences: 28952
Number of extensions: 341047
Number of successful extensions: 758
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)