Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B10
         (898 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29910.1 68417.m04256 origin recognition complex subunit 5-re...    29   5.5  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    28   7.3  

>At4g29910.1 68417.m04256 origin recognition complex subunit
           5-related (ORC5) contains weak similarity to Origin
           recognition complex subunit 5 (Swiss-Prot:Q9WUV0) [Mus
           musculus]
          Length = 534

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 660 RASQKSTLXSEVAKPDRTIKXPGVXPLESSL 752
           +AS+KS    E+A+ +  +K PG  PLE  L
Sbjct: 412 KASEKSMEKKEIAEQEAVMKGPGSFPLERLL 442


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 649 RPPDEHHKNRRSXQRWRNPTGL*RXQAFXPWKAPS 753
           RPPDEH  NR   + W       R     P+ AP+
Sbjct: 667 RPPDEHRLNRADSKHWDYIPDFPRILIDGPYGAPA 701


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,860,024
Number of Sequences: 28952
Number of extensions: 169390
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)