Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B09
         (878 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   7.3  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 171 LQIHFSSPEHFLFSKISSHC*YSL 100
           L  H S  E+ +F  +S  C YSL
Sbjct: 582 LSYHLSCAENMMFDPMSGKCEYSL 605


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 564 TFYFNFIWIVLTMFSYLVCVLCTFTIFI 481
           T+YF + +I+L    Y       FT+ +
Sbjct: 100 TYYFYYAFIILLCVYYFYYAFIIFTVHL 127


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 700 QLCLFDRVLYFPNRKHH 650
           Q C+F+   YFP  + H
Sbjct: 747 QKCIFNGQAYFPGSRFH 763


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 827 YGQPXILLGLMGFDWSYLNNISXILC 750
           YG    L    GFDW Y  + + I C
Sbjct: 70  YGMLARLAVEAGFDWVYYESRAHIHC 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,838
Number of Sequences: 336
Number of extensions: 3581
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)