Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B09
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    29   1.2  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    27   3.5  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    27   4.7  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   4.7  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    27   4.7  

>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 283 HRILKRNPNKLDPLPILKCIVDL*DSTYK 197
           ++++K  PNK+DPL  L  +  + DSTY+
Sbjct: 117 YQLIKILPNKVDPLVSLMMVEKIPDSTYE 145


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 121 ADFAKEKVFWTRKMNLKLVKFIESRPYMWNPKDPLYTSISAKDQAYSDF 267
           A F  E VF+T K+  +LVKF++ +  +   +D    S+  ++  Y +F
Sbjct: 281 AKFGPE-VFYTGKIAERLVKFVQQQGGILTMEDMANFSVVVEEPIYGNF 328


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 748 SLVQLHKS*FHLVFLLQLCLFDRVLYFPNRKHHAEYRGRRMLNFR 614
           SL+ + KS   LV  LQL L DR+L   +  +  E +    L +R
Sbjct: 378 SLISIFKSKEPLVKELQLLLADRLLQLTDYHYEVEAKNIEFLKYR 422


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 585  HRFNFRITFYFNFIWIVLTMFS 520
            + FN  I FY  F W++L +F+
Sbjct: 1196 YEFNHNIPFYGGFAWLMLMIFT 1217


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 217 DPLYTSISAKDQAYSDFASKYGDEFSWQAVKE 312
           DPL+  I     A S + + Y DE  WQ   E
Sbjct: 230 DPLHDEIDEDSNAESFYQNSYPDEDEWQDSSE 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,078
Number of Sequences: 5004
Number of extensions: 59486
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)