Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B09
         (878 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4274| Best HMM Match : LRV (HMM E-Value=5.7)                        35   0.100
SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.8  
SB_20319| Best HMM Match : IncA (HMM E-Value=0.2)                      29   6.6  
SB_36861| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_34114| Best HMM Match : Transthyretin (HMM E-Value=1.1e-13)         28   8.7  

>SB_4274| Best HMM Match : LRV (HMM E-Value=5.7)
          Length = 327

 Score = 34.7 bits (76), Expect = 0.100
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = +1

Query: 133 KEKVFWTRKMNLKLVKFIESRPYMWNPKDPLYTSISAKDQAYSDFASKYGDEFSWQAVKE 312
           ++ + WT       + F ++   +WN   P Y +   KD  ++    +    ++ Q V+ 
Sbjct: 52  EDTLAWTAGDTDTFILFYQTNESLWNHNIPEYHTNRNKDLLFNCLIKELKYRYTKQDVEI 111

Query: 313 RWTNIRSTYNNYLRKI--KASRTKRDGEIYKVNWHLWTACSF 432
           +W ++   Y     K   K S    D E+Y+ +W  +T   F
Sbjct: 112 KWKSLLKFYRQEHEKAQHKPSGWGTD-EVYQSSWEFYTQLQF 152


>SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/88 (23%), Positives = 36/88 (40%)
 Frame = +1

Query: 169 KLVKFIESRPYMWNPKDPLYTSISAKDQAYSDFASKYGDEFSWQAVKERWTNIRSTYNNY 348
           +L+   E RP +W+  +  Y     + +A  + A + G   +   VK +  ++RS     
Sbjct: 39  QLIDLFEERPCLWDVSNKEYYQKGNRQRAEEEIAEQMG--ITLNDVKSKIKSLRSQLGRE 96

Query: 349 LRKIKASRTKRDGEIYKVNWHLWTACSF 432
           + KI+ S      E Y   W  W    F
Sbjct: 97  IYKIRTS------ENYVPIWIFWHKLQF 118


>SB_20319| Best HMM Match : IncA (HMM E-Value=0.2)
          Length = 566

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 580 PVSLNMDCFSIAESLASVFRGIQHDAFGLENTKHGQIGRAVTRKLNEISSY 732
           P+++ M+  ++A  L S+  G  +    ++  KH +I      KLN IS +
Sbjct: 436 PIAIAMEAGALAAGLLSIVCGQVNKKLAMKAEKHEKIKTLADAKLNTISDH 486


>SB_36861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = +1

Query: 142 VFWTRKMNLKLVKFIESRPYMWNPKDPLYT-SISAKDQAYSDFASKYGDEFSWQAVKERW 318
           V +  + N  ++ F +SR  MW    PLYT S+     A S     Y   F   A+++R 
Sbjct: 492 VAYDSRGNPAVLAFGQSRYNMWCTPSPLYTPSLMGHLFALSSVKILYASAF---ALRQRM 548

Query: 319 TNIRSTYNNYLRKIKASRTKRDGEIYKVNWHL 414
            +   T+ +Y+            E+ + NWHL
Sbjct: 549 LHFVQTFEHYMM----------FEVLEPNWHL 570


>SB_34114| Best HMM Match : Transthyretin (HMM E-Value=1.1e-13)
          Length = 626

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 328 RSTYNNYLRKIKASRTKRDGEIYK 399
           +++ NN LRK      KRDG+ YK
Sbjct: 93  KTSLNNILRKFYVEARKRDGDFYK 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,216,838
Number of Sequences: 59808
Number of extensions: 391037
Number of successful extensions: 1048
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)