Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B09
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    31   0.82 
U41012-7|AAM75375.1|  639|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U41012-6|AAM75376.1|  642|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z81530-1|CAB04312.1|  290|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81042-7|CAE46660.1|  371|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z73976-9|CAA98280.2|  371|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U61235-1|AAB17540.1|  485|Caenorhabditis elegans ZK protein.           28   7.7  
U21308-4|AAB93321.1|  484|Caenorhabditis elegans Warthog (hedgeh...    28   7.7  

>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 20/61 (32%), Positives = 34/61 (55%)
 Frame = -1

Query: 218 SLGFHI*GRLSINLTNFRFIFLVQNTFSLAKSAVIVDTH*CLVKNIVYIL*VMLLFQHLN 39
           +L F I  +L + L+NF++ FLV N FS     V   TH  +V+     + V ++F+ ++
Sbjct: 29  TLIFLIFQKLPVFLSNFKY-FLVNNAFSQLALVVFAFTHSAVVQGSGMAILVTIVFRFIH 87

Query: 38  L 36
           L
Sbjct: 88  L 88


>U41012-7|AAM75375.1|  639|Caenorhabditis elegans Hypothetical
           protein C06A6.2a protein.
          Length = 639

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 160 MNLKLVKFIESRPYMWNPKDPLYTSISAKDQAYSDFASK 276
           M + L+  I+ +P +W    P   ++ A++Q + DF  +
Sbjct: 246 MYMALIDMIQDKPELWQSNHPQKDNLQAQEQLFEDFGKQ 284


>U41012-6|AAM75376.1|  642|Caenorhabditis elegans Hypothetical
           protein C06A6.2b protein.
          Length = 642

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 160 MNLKLVKFIESRPYMWNPKDPLYTSISAKDQAYSDFASK 276
           M + L+  I+ +P +W    P   ++ A++Q + DF  +
Sbjct: 246 MYMALIDMIQDKPELWQSNHPQKDNLQAQEQLFEDFGKQ 284


>Z81530-1|CAB04312.1|  290|Caenorhabditis elegans Hypothetical
           protein F36D1.1 protein.
          Length = 290

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
 Frame = +1

Query: 148 WTRKMNLKLVKFIESRPYMWNPK---DPLYTSI--SAKDQAYSDFASKY--GDEFSWQAV 306
           WT      L+  I +RP +W+     +  Y ++  S   +  S+  S +    +F+ + V
Sbjct: 4   WTDPSRQCLINAIRNRPVIWDKNYFGESNYRTLKTSCLREVTSELNSMFQMPIKFTCEDV 63

Query: 307 KERWTNIRSTYNNYLRKIKASRTKRDGEIYKVNWHLWTACSF 432
           + +W N++ T+   LR +   +   D  + +  W  +   +F
Sbjct: 64  RSQWKNLKDTFVRKLRWVHEGKYMEDA-MKEPTWKFYRMLTF 104


>Z81042-7|CAE46660.1|  371|Caenorhabditis elegans Hypothetical
           protein T07C12.11 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 166 LKLVKFIESRPYMWNPKDPLYTSISAKDQAYSDFASKYGDEFSWQAVKERWTNIRSTYNN 345
           L L+  ++  P ++N  DPL+     K + +   + + G +     ++ +W ++R  Y  
Sbjct: 20  LALIDSVQRNPCVYNRYDPLHKVTDYKHEIWKLISIEIGYDGQPVELERKWKHMRDKYVR 79

Query: 346 YLRKIKASRTKRDGEIYKVN-WH 411
            LRK    + K+   I K N W+
Sbjct: 80  -LRK----QDKQKAPIKKTNKWY 97


>Z73976-9|CAA98280.2|  371|Caenorhabditis elegans Hypothetical
           protein T07C12.11 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 166 LKLVKFIESRPYMWNPKDPLYTSISAKDQAYSDFASKYGDEFSWQAVKERWTNIRSTYNN 345
           L L+  ++  P ++N  DPL+     K + +   + + G +     ++ +W ++R  Y  
Sbjct: 20  LALIDSVQRNPCVYNRYDPLHKVTDYKHEIWKLISIEIGYDGQPVELERKWKHMRDKYVR 79

Query: 346 YLRKIKASRTKRDGEIYKVN-WH 411
            LRK    + K+   I K N W+
Sbjct: 80  -LRK----QDKQKAPIKKTNKWY 97


>U61235-1|AAB17540.1|  485|Caenorhabditis elegans ZK protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 222 WIFRIPHIRAAFDKLNQLQ--IHFSSPEHFLF 133
           W+ R+P  +AAF KL   Q  I   +P+HF++
Sbjct: 332 WLHRLPDTKAAFIKLTTEQGAIIDMTPQHFIY 363


>U21308-4|AAB93321.1|  484|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 1 protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 222 WIFRIPHIRAAFDKLNQLQ--IHFSSPEHFLF 133
           W+ R+P  +AAF KL   Q  I   +P+HF++
Sbjct: 331 WLHRLPDTKAAFIKLTTEQGAIIDMTPQHFIY 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,343,729
Number of Sequences: 27780
Number of extensions: 320557
Number of successful extensions: 942
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)