Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B09
         (878 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24960.1 68415.m02985 expressed protein ; expression supporte...    34   0.14 
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ...    29   4.1  
At1g45545.1 68414.m05199 hypothetical protein contains Pfam prof...    29   5.4  
At2g45380.1 68415.m05645 expressed protein similar to gi2344899|...    28   7.2  
At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative              28   9.5  
At2g41950.1 68415.m05190 expressed protein                             28   9.5  

>At2g24960.1 68415.m02985 expressed protein ; expression supported
           by MPSS
          Length = 797

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/71 (22%), Positives = 37/71 (52%)
 Frame = +1

Query: 133 KEKVFWTRKMNLKLVKFIESRPYMWNPKDPLYTSISAKDQAYSDFASKYGDEFSWQAVKE 312
           + ++FWT  M+  L+  +  +    N     + + SA ++  + F +K+G + +   +K 
Sbjct: 322 RTRIFWTPPMDYHLIDLLVEQVNNGNRVGQTFIT-SAWNEMVTAFNAKFGSQHNKDVLKN 380

Query: 313 RWTNIRSTYNN 345
           R+ ++R  YN+
Sbjct: 381 RYKHLRRLYND 391



 Score = 31.5 bits (68), Expect = 0.77
 Identities = 17/80 (21%), Positives = 35/80 (43%)
 Frame = +1

Query: 106 VSTMTADFAKEKVFWTRKMNLKLVKFIESRPYMWNPKDPLYTSISAKDQAYSDFASKYGD 285
           +S  T    + + +WT  M    +  +    +  N     +    A ++  + F SK+G 
Sbjct: 1   MSNQTTCNDRTRTYWTPTMERFFIDLMLEHLHRGNRTGHTFNK-QAWNEMLTVFNSKFGS 59

Query: 286 EFSWQAVKERWTNIRSTYNN 345
           ++    +K R+TN+   YN+
Sbjct: 60  QYDKDVLKSRYTNLWKQYND 79


>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
            SP|Q42510 Pattern formation protein EMB30 (GNOM)
            {Arabidopsis thaliana}; contains Pfam profile PF01369:
            Sec7 domain
          Length = 1375

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 809  LLGLMGFDWSYLNNISXILCITCAAS 732
            L+GLM F+ S+L+  S   CI CA S
Sbjct: 1094 LIGLMSFNASHLSQSSYAYCIDCAFS 1119


>At1g45545.1 68414.m05199 hypothetical protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827)
          Length = 752

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +1

Query: 196 PYMWNPKDPLYTSISAKDQAYSDFASKYGDEFSWQAVKERWTNIRSTYNNYLRKIK 363
           P   +P  P+    +A  ++  +  SK+G    W+A K +    R T +  L KI+
Sbjct: 144 PRFVSPTSPVLIDTAAPFESVKEAVSKFGGITDWKAHKIQTIERRKTVDQELEKIQ 199


>At2g45380.1 68415.m05645 expressed protein similar to
           gi2344899|AC002388
          Length = 491

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 691 GRAVTRKLNEISSYEAAQVMHKIXE 765
           G +VTRKLN     E+ Q +H + E
Sbjct: 401 GHSVTRKLNSSGGVESTQTLHNLDE 425


>At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative
          Length = 268

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 475 IVSIHYCFLYLILIRNYRQSR 413
           IVS   CFLYL+ I +Y +SR
Sbjct: 62  IVSSSLCFLYLLSILHYNESR 82


>At2g41950.1 68415.m05190 expressed protein
          Length = 266

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 183 KLNQLQIHFSSPEHFLFSK 127
           KLN+LQ H  SP+H  FS+
Sbjct: 32  KLNRLQSHLFSPQHLSFSQ 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,065,321
Number of Sequences: 28952
Number of extensions: 281941
Number of successful extensions: 597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)