Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B08
         (1029 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.26 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   9.9  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 619  PPPPXXSXXXXPPRPPXLXXPPAXPP 696
            PPPP  S    P  PP    PP+ PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 625  PPXXSXXXXPPRPPXLXXPPAXPP 696
            PP  S    PP P  +  PP+ PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP 1722


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = +1

Query: 619 PPPPXXSXXXXPPRPP-XLXXPPAXPPR 699
           PPPP  +     P PP     PP  PPR
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPR 367


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
 Frame = +1

Query: 619  PPPPXXSXXXXPPRP-PXLXXPPAXPP 696
            PPPP       PP   P    PPA PP
Sbjct: 1884 PPPPMALPKAGPPSAAPTSALPPAGPP 1910


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,044
Number of Sequences: 5004
Number of extensions: 22551
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)