Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_B08
(1029 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.070
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 34 0.16
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 33 0.37
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 33 0.49
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 33 0.49
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.65
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.86
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 31 1.5
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 30 2.6
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 30 3.5
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 29 4.6
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 29 4.6
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 6.1
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 6.1
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 29 6.1
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 6.1
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 29 6.1
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_15225| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 35.5 bits (78), Expect = 0.070
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Frame = +2
Query: 437 GGAXPXXXTPPGGXXXLPXXXX------PPPPXGXXEXXXXXXPHLSXXXGGGGXXXKIP 598
GG+ P PPGG LP PPP G P S GGG P
Sbjct: 916 GGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPP 975
Query: 599 XXXFXSPPXPP 631
+PP PP
Sbjct: 976 PPGGSAPPPPP 986
Score = 33.5 bits (73), Expect = 0.28
Identities = 23/79 (29%), Positives = 23/79 (29%)
Frame = +1
Query: 565 GGGRGXXXKNPXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPPRXXAXXRRXXXIPXRR 744
GG P L PPPP S PP P PP PP A P
Sbjct: 916 GGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPP 975
Query: 745 RPAXXAPXXXXXXFAXAPP 801
P AP PP
Sbjct: 976 PPGGSAPPPPPPPPPPPPP 994
Score = 30.3 bits (65), Expect = 2.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 437 GGAXPXXXTPPGGXXXLPXXXXPPPP 514
GG P PPGG P PPPP
Sbjct: 967 GGGAPPLPPPPGGSAPPPPPPPPPPP 992
Score = 28.7 bits (61), Expect = 8.0
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +1
Query: 568 GGRGXXXKNPXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPP 696
GG +P PPPP PP PP P PP
Sbjct: 905 GGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPP 947
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 34.3 bits (75), Expect = 0.16
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPPRXXAXXRRXXXIPXRRR 747
PPPP PP PP PP PP R P R R
Sbjct: 402 PPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRLACAPPRLR 444
Score = 33.5 bits (73), Expect = 0.28
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP S PP PP PP PP
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPP 396
Score = 33.5 bits (73), Expect = 0.28
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 592 NPXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPP 696
+P + PPPP PP PP PPA PP
Sbjct: 388 SPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPP 422
Score = 32.3 bits (70), Expect = 0.65
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP+PP PP PP
Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPPPPP 406
Score = 31.1 bits (67), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP PP
Sbjct: 372 PPPPPSPPPPPPPPPPSPPPPPQPPP 397
Score = 31.1 bits (67), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP PP
Sbjct: 378 PPPPPPPPPPSPPPPPQPPPPPPPPP 403
Score = 31.1 bits (67), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP PP
Sbjct: 384 PPPPSPPPPPQPPPPPPPPPPPPPPP 409
Score = 31.1 bits (67), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP PP
Sbjct: 400 PPPPPPPPPPPPPPPPPPPAPPPPPP 425
Score = 31.1 bits (67), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP PP
Sbjct: 401 PPPPPPPPPPPPPPPPPPAPPPPPPP 426
Score = 30.3 bits (65), Expect = 2.6
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPPRXXAXXRRXXXIPXRRRPAXXAPXXXXXXFAXAP 798
PPPP S P PP PP PP P P P A AP
Sbjct: 382 PPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPP-PPPPPPPPPPPALRLACAP 440
Query: 799 P 801
P
Sbjct: 441 P 441
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/76 (23%), Positives = 19/76 (25%)
Frame = +3
Query: 618 PPXPXXLXAXPSSKTXXXXSPPGPPPQXXXXPEAXXXXXXXXXXXXXXXXXXXSXXRXRP 797
PP P PS PP PPP P + P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425
Query: 798 PPXXXPPXXMXPHXPP 845
PP PP PP
Sbjct: 426 PPPPPPPALRLACAPP 441
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP+ PP
Sbjct: 367 PPPPPPPPPPSPPPPPP-PPPPSPPP 391
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 33.1 bits (72), Expect = 0.37
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPPRXXA 708
PPPP PPRPP PP PPR A
Sbjct: 215 PPPPPPPPSPSPPRPP--PPPPPSPPRPLA 242
Score = 31.9 bits (69), Expect = 0.86
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 592 NPXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPP 696
+P + PPPP PP PP PP PP
Sbjct: 197 SPSQITQPPPPPPRPPPSPPPPPPPPSPSPPRPPP 231
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 32.7 bits (71), Expect = 0.49
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 589 KNPXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPP 696
KN L PPP PP PP + PP PP
Sbjct: 169 KNSVSPGILAPPPAPPGVLAPPPAPPGVLPPPPAPP 204
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 32.7 bits (71), Expect = 0.49
Identities = 27/96 (28%), Positives = 30/96 (31%), Gaps = 4/96 (4%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXL----XXPPAXPPRXXAXXRRXXXIPXRRRPAXXAPXXXXXXF 786
PPPP PP PP + PP PP A P PA P
Sbjct: 127 PPPPTSPATRAPPPPPPIAPATGGPPPPPP--IAPATGGPPPPPPIAPAATVPAPAVPLA 184
Query: 787 AXAPPXXAXXPXXXDPTXLPXHXXAPSXXXLXXPGP 894
A +PP + P P P P L P P
Sbjct: 185 AASPPPPSGGPPPPPPP--PPPPPPPPILELAAPPP 218
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 30.7 bits (66), Expect = 2.0
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 595 PXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPP 696
P R PPPP P P L PP+ PP
Sbjct: 2142 PMGSSRYGPPPPMGPARHSPSGPSPLGAPPSVPP 2175
Score = 28.3 bits (60), Expect(2) = 0.60
Identities = 13/46 (28%), Positives = 15/46 (32%)
Frame = +3
Query: 558 PPRXGAGEXTQKSXXXXSXXPPXPXXLXAXPSSKTXXXXSPPGPPP 695
PP G + P P + A PS P GPPP
Sbjct: 2151 PPPMGPARHSPSGPSPLGAPPSVPPPMGAPPSGPPPMGAPPSGPPP 2196
Score = 22.6 bits (46), Expect(2) = 0.60
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +3
Query: 798 PPXXXPPXXMXPHXPPXSXSRA 863
PP PP P PP S S +
Sbjct: 2200 PPSGHPPMGAPPMGPPPSGSHS 2221
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 32.3 bits (70), Expect = 0.65
Identities = 26/96 (27%), Positives = 26/96 (27%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPPRXXAXXRRXXXIPXRRRPAXXAPXXXXXXFAXAP 798
PPPP PP PP L PP PP A P P P AP
Sbjct: 149 PPPPN------PPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAP 202
Query: 799 PXXAXXPXXXDPTXLPXHXXAPSXXXLXXPGPXETN 906
P P P P P P N
Sbjct: 203 NPPPPNPPYPPPPNAPNPPYPPPPNAPNPPYPPPPN 238
Score = 31.1 bits (67), Expect = 1.5
Identities = 30/124 (24%), Positives = 35/124 (28%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPPRXXAXXRRXXXIPXRRRPAXXAPXXXXXXFAXAP 798
PPPP PP PP P PP P P AP P
Sbjct: 95 PPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYP----PPPNAPYPPSPNAPYPP 150
Query: 799 PXXAXXPXXXDPTXLPXHXXAPSXXXLXXPGPXETNDCC*SXXPXPSPXGSXRLKEVSPE 978
P P P P + P+ P P N P P+P +P
Sbjct: 151 PPNPPYPPPLYPP--PPNPPPPNAPYPPPPYPPPPNP---PYPPPPNPPYPPPPNAPNPP 205
Query: 979 XPSP 990
P+P
Sbjct: 206 PPNP 209
Score = 29.1 bits (62), Expect = 6.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 592 NPXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPP 696
NP PPPP PP PP PP PP
Sbjct: 203 NPPPPNPPYPPPPNAPNPPYPP-PPNAPNPPYPPP 236
Score = 28.7 bits (61), Expect = 8.0
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 592 NPXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXP 693
NP L PPPP P PP PP P
Sbjct: 153 NPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPP 186
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 31.9 bits (69), Expect = 0.86
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 568 GGRGXXXKNPXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPP 696
G G NP PP P PP PP PP PP
Sbjct: 337 GTSGGGGVNPPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPP 379
Score = 31.9 bits (69), Expect = 0.86
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP + PP PP PP PP
Sbjct: 365 PPPPPPTNKPPPPPPPTNGPPPPPPP 390
Score = 31.9 bits (69), Expect = 0.86
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP PP
Sbjct: 374 PPPPPPPTNGPPPPPPPTNGPPPPPP 399
Score = 31.9 bits (69), Expect = 0.86
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP + PP PP PP PP
Sbjct: 375 PPPPPPTNGPPPPPPPTNGPPPPPPP 400
Score = 31.9 bits (69), Expect = 0.86
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP PP
Sbjct: 384 PPPPPPPTNGPPPPPPPTNGPPPPPP 409
Score = 31.9 bits (69), Expect = 0.86
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP + PP PP PP PP
Sbjct: 385 PPPPPPTNGPPPPPPPTNGPPPPPPP 410
Score = 31.5 bits (68), Expect = 1.1
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = +1
Query: 544 KXTSLXXGGGRGXXXKNPXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPP 696
+ T + GG G P PPPP + PP PP PP PP
Sbjct: 332 RMTVVGTSGGGGVNPPPPPTNNPPSPPPPTNNTP--PPPPPTNKPPPPPPP 380
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 31.1 bits (67), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP PP
Sbjct: 686 PPPPPPPPPPPPPPPPQPSTPPPPPP 711
Score = 29.5 bits (63), Expect = 4.6
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 595 PXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPP 696
P + PPPP PP PP P PP
Sbjct: 675 PIPIQTMVPPPPPPPPPPPPPPPPPPPQPSTPPP 708
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +1
Query: 553 SLXXGGGRGXXXKNPXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPP 696
++ GGG+ NP ++ P P PP PP PP PP
Sbjct: 654 TIQPGGGQTISV-NPSIPIQILPIPIQTMVPPPPPPPPPPPPPPPPPP 700
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 31.1 bits (67), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP PP
Sbjct: 465 PPPPPPPPPPPPPPPPPPPPPPPFPP 490
Score = 31.1 bits (67), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP PP
Sbjct: 469 PPPPPPPPPPPPPPPPPPPFPPPPPP 494
Score = 30.7 bits (66), Expect = 2.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP PP
Sbjct: 466 PPPPPPPPPPPPPPPPPPPPPPFPPP 491
Score = 29.1 bits (62), Expect = 6.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPPP PP PP PP P
Sbjct: 471 PPPPPPPPPPPPPPPPPFPPPPPPTP 496
>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 30.3 bits (65), Expect = 2.6
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +1
Query: 592 NPXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPP 696
NP L P PP + PP P PP PP
Sbjct: 214 NPPEPDYLEPTPPPPAAPAPPPPPAAAPPPPPPPP 248
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 30.3 bits (65), Expect = 2.6
Identities = 24/100 (24%), Positives = 27/100 (27%)
Frame = +1
Query: 595 PXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPPRXXAXXRRXXXIPXRRRPAXXAPXXX 774
P R PPPP PP P + P PP + R P R P +
Sbjct: 297 PPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPP--PSRGAPPPPSMGMA 354
Query: 775 XXXFAXAPPXXAXXPXXXDPTXLPXHXXAPSXXXLXXPGP 894
A P P P P L P P
Sbjct: 355 PPPVGGAAPPPPPPPPVGGPPPPPPPIEGRPPSSLGNPPP 394
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 29.9 bits (64), Expect = 3.5
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPPRXXAXXRRXXXIPXRRR 747
PPPP PP PP P PP +P R R
Sbjct: 196 PPPPPGPGGIPPPPPPIRGGVPPPPPMGGGSLALDSGLPNRDR 238
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 29.5 bits (63), Expect = 4.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPP 696
PPP S PP PP PP PP
Sbjct: 294 PPPADGSAPAPPPPPPPGGAPPPPPP 319
Score = 29.1 bits (62), Expect = 6.1
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +1
Query: 565 GGGRGXXXKNPXXXXRLXPPPPXXSXXXXPPRPPXLXXPP 684
GGG P PPPP PP PP PP
Sbjct: 286 GGGAPVPPPPPADGSAPAPPPPPPPGGAPPPPPPPPPPPP 325
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 29.5 bits (63), Expect = 4.6
Identities = 24/91 (26%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Frame = +1
Query: 595 PXXXXRLXPPPPXXSXXXXPPR-PPXLXXPPAXPPRXXAXXRRXXXIPXRRRPAXXAPXX 771
P R P PP PPR PP L P P R R +P R P+
Sbjct: 286 PTLPPRYPPSPPRYPPS--PPRYPPSLHRYPQSPLRYPPSPIRYPPLPSRYPPSPPRYPS 343
Query: 772 XXXXFAXAPPXXAXXPXXXDPTXLPXHXXAP 864
+ +PP P P+ P + +P
Sbjct: 344 SHPRYPPSPPRYPPSPPRY-PSSHPRYPPSP 373
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 6.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXP 693
PPPP PP PP PP P
Sbjct: 30 PPPPPYEAPPPPPGPPGPDGPPGFP 54
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.1 bits (62), Expect = 6.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 622 PPPXXSXXXXPPRPPXLXXPPAXP 693
PPP + PP PP L PP P
Sbjct: 75 PPPPAAPPAAPPPPPPLPAPPPPP 98
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 29.1 bits (62), Expect = 6.1
Identities = 26/107 (24%), Positives = 27/107 (25%)
Frame = +1
Query: 622 PPPXXSXXXXPPRPPXLXXPPAXPPRXXAXXRRXXXIPXRRRPAXXAPXXXXXXFAXAPP 801
PP PP PP PA PP A P R P A PP
Sbjct: 288 PPSNSFTTQGPPLPPSRDQAPAPPPPLNA---TPPPPPPSRDQVPLPPPPLRGQIAPPPP 344
Query: 802 XXAXXPXXXDPTXLPXHXXAPSXXXLXXPGPXETNDCC*SXXPXPSP 942
+ P P AP P P P P P
Sbjct: 345 PISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGRRPPSGKINPPPPP 391
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 29.1 bits (62), Expect = 6.1
Identities = 22/82 (26%), Positives = 25/82 (30%)
Frame = +1
Query: 619 PPPPXXSXXXXPPRPPXLXXPPAXPPRXXAXXRRXXXIPXRRRPAXXAPXXXXXXFAXAP 798
PPP + P P PPA PP A P+ AP AP
Sbjct: 439 PPPSVFASSSGVPTP-VTAPPPAPPPSVFAPSSGVPTPVAAPPPSVFAPSSGVPTPVAAP 497
Query: 799 PXXAXXPXXXDPTXLPXHXXAP 864
P P PT + AP
Sbjct: 498 PPSVFAPSSGVPTTVTAPPAAP 519
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.1 bits (62), Expect = 6.1
Identities = 26/107 (24%), Positives = 27/107 (25%)
Frame = +1
Query: 622 PPPXXSXXXXPPRPPXLXXPPAXPPRXXAXXRRXXXIPXRRRPAXXAPXXXXXXFAXAPP 801
PP PP PP PA PP A P R P A PP
Sbjct: 200 PPSNSFTTQGPPLPPSRDQAPAPPPPLNA---TPPPPPPSRDQVPLPPPPLRGQIAPPPP 256
Query: 802 XXAXXPXXXDPTXLPXHXXAPSXXXLXXPGPXETNDCC*SXXPXPSP 942
+ P P AP P P P P P
Sbjct: 257 PISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGRRPPSGKINPPPPP 303
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 29.1 bits (62), Expect = 6.1
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -2
Query: 680 GXXXXGGLGGXXXXEXXGGGGXXRXXXXGFLXXFPRPPPXXRD 552
G GG GG GGGG R GF PPP D
Sbjct: 337 GGSGRGGGGGGGGGGGGGGGGGGRGGGGGFSSRGRGPPPRRSD 379
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/52 (28%), Positives = 18/52 (34%)
Frame = +1
Query: 595 PXXXXRLXPPPPXXSXXXXPPRPPXLXXPPAXPPRXXAXXRRXXXIPXRRRP 750
P R PPP P +P PA PPR +P R+P
Sbjct: 1040 PLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPPRQP 1091
>SB_15225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 29.1 bits (62), Expect = 6.1
Identities = 32/126 (25%), Positives = 38/126 (30%), Gaps = 2/126 (1%)
Frame = -2
Query: 989 GXGXSGETSXXRXLPXGDGXGXXD*QQSXVSXGPGXXRXXXXGAXX*XGRXVGSHXXGXX 810
G G +GE R G+G G + G G G G +G
Sbjct: 45 GGGMAGE-GMGRGGMAGEGMGGGG--MAGEGMGRGGMAGEGMGGGGMAGEGMGRGGIAGE 101
Query: 809 AXWGGAXAXXXXXXXGAXXAGRRRXGXLXXRLXXAXXLG-GXAGGXXXXGGLGGXXXX-E 636
GG A G G R G + G G GG G+GG E
Sbjct: 102 GMGGGGMAGEGMSRGGIAGEGMGRGGMAGEGMGRGGMAGEGMGGGGMAGEGMGGGGMAGE 161
Query: 635 XXGGGG 618
GGGG
Sbjct: 162 GMGGGG 167
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 28.7 bits (61), Expect = 8.0
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 622 PPPXXSXXXXPPRPPXLXXPPAXPP 696
PPP PP+PP + PP P
Sbjct: 1253 PPPPPGMRPMPPQPPFMPPPPRMQP 1277
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,342,389
Number of Sequences: 59808
Number of extensions: 266015
Number of successful extensions: 1506
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3071064787
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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