Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B07
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   2.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   2.8  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    27   2.8  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   3.7  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   4.9  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   6.5  

>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 208 FTGHGGKQRTKXXASEHTNHFDPSGHSRKIVTKLMNAEHN 327
           ++GH         ++   NHF+ +GH    +T  +N+ +N
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 600 YVQNIPTYCLAHLWRCPVLNRSLCEWA 520
           Y+QNIP       +RC  ++ ++C+W+
Sbjct: 466 YLQNIPIQKKYESYRCLFISGTICQWS 492


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 438 PRSVRVDAR-LRDRWNILGVFCSHKISTSPTHRGCDLERDNATNEPSSKSVYFGRNTVPV 614
           P S R+++  ++ +W+ LG   S K+ T P      + + +AT E + K        VPV
Sbjct: 403 PNSPRLNSTVIQSKWDSLGHTASPKMQTQPVR---SVSQSSATTETNVKPTKEENADVPV 459

Query: 615 S 617
           S
Sbjct: 460 S 460


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 262 NHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 351
           +HFDPS + +K+V+      + K +S  KH
Sbjct: 43  SHFDPSSYKQKLVSVRETQRNRKFSSLQKH 72


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 641 LTSPLFEIRHWNGVTSKIYRLTAWLICGVVP 549
           L  P F + HW     + Y    WL C  +P
Sbjct: 251 LEMPFFALSHWYAFRIEDYDTPTWLSCARLP 281


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 203 TFSRATVVSSAPXKXRLNTPTTSIRPGI 286
           TF+R TV+++   + R++TP+  I  G+
Sbjct: 374 TFNRGTVLAATSSQPRVSTPSLDIALGV 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,652
Number of Sequences: 5004
Number of extensions: 52488
Number of successful extensions: 254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)