BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fdpeP02_F_B07 (919 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 2.1 SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 2.8 SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 27 2.8 SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 3.7 SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 27 4.9 SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 26 6.5 >SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 312 Score = 27.9 bits (59), Expect = 2.1 Identities = 10/40 (25%), Positives = 20/40 (50%) Frame = +1 Query: 208 FTGHGGKQRTKXXASEHTNHFDPSGHSRKIVTKLMNAEHN 327 ++GH ++ NHF+ +GH +T +N+ +N Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281 >SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 642 Score = 27.5 bits (58), Expect = 2.8 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = -2 Query: 600 YVQNIPTYCLAHLWRCPVLNRSLCEWA 520 Y+QNIP +RC ++ ++C+W+ Sbjct: 466 YLQNIPIQKKYESYRCLFISGTICQWS 492 >SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 630 Score = 27.5 bits (58), Expect = 2.8 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = +3 Query: 438 PRSVRVDAR-LRDRWNILGVFCSHKISTSPTHRGCDLERDNATNEPSSKSVYFGRNTVPV 614 P S R+++ ++ +W+ LG S K+ T P + + +AT E + K VPV Sbjct: 403 PNSPRLNSTVIQSKWDSLGHTASPKMQTQPVR---SVSQSSATTETNVKPTKEENADVPV 459 Query: 615 S 617 S Sbjct: 460 S 460 >SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1201 Score = 27.1 bits (57), Expect = 3.7 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +1 Query: 262 NHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 351 +HFDPS + +K+V+ + K +S KH Sbjct: 43 SHFDPSSYKQKLVSVRETQRNRKFSSLQKH 72 >SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 426 Score = 26.6 bits (56), Expect = 4.9 Identities = 10/31 (32%), Positives = 13/31 (41%) Frame = -3 Query: 641 LTSPLFEIRHWNGVTSKIYRLTAWLICGVVP 549 L P F + HW + Y WL C +P Sbjct: 251 LEMPFFALSHWYAFRIEDYDTPTWLSCARLP 281 >SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23|Schizosaccharomyces pombe|chr 2|||Manual Length = 476 Score = 26.2 bits (55), Expect = 6.5 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +2 Query: 203 TFSRATVVSSAPXKXRLNTPTTSIRPGI 286 TF+R TV+++ + R++TP+ I G+ Sbjct: 374 TFNRGTVLAATSSQPRVSTPSLDIALGV 401 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,776,652 Number of Sequences: 5004 Number of extensions: 52488 Number of successful extensions: 254 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 254 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 466510270 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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