Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B07
         (919 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)                 28   9.2  

>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/63 (36%), Positives = 34/63 (53%)
 Frame = +1

Query: 160 FFDXXAXXNFDHXKHIFTGHGGKQRTKXXASEHTNHFDPSGHSRKIVTKLMNAEHNKKTS 339
           +FD     NFD  +++  G+  K R+K  A  +TN F P GH RK++ K  N E N+   
Sbjct: 4   YFDEYDYYNFD--RNVVEGNTRKGRSKREACLNTNRFCPGGHERKVLEKYRNTEKNRAAK 61

Query: 340 NTK 348
            +K
Sbjct: 62  PSK 64


>SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 333 DFKHQTLDGLLINKQLWLAEGLLSCQTKGGRYCGYPRSVRVDARL 467
           +++ Q L G L   QLW+   + SC ++   +CG    + +   L
Sbjct: 53  EYRQQLLSGTLT--QLWVVASMRSCTSRYTGFCGVKEEINLQQAL 95


>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
          Length = 512

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 380 MASRRTIELPNERRTLLRIPEEC 448
           + S RT  +PN  RTLL+IP  C
Sbjct: 461 LVSNRTDLIPNINRTLLKIPNYC 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,863,807
Number of Sequences: 59808
Number of extensions: 415151
Number of successful extensions: 974
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)