Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B07
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   9.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 95  FPLCFLVFNL 124
           FP+CF+ FNL
Sbjct: 412 FPVCFVCFNL 421


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 95  FPLCFLVFNL 124
           FP+CF+ FNL
Sbjct: 412 FPVCFVCFNL 421


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 95  FPLCFLVFNL 124
           FP+CF+ FNL
Sbjct: 350 FPVCFVCFNL 359


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/18 (38%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 424 RPPF-VWQLNSPSASHSC 374
           RP +  W+LN+ ++ H+C
Sbjct: 8   RPSYCTWELNATNSPHTC 25


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -3

Query: 458 IHPNTPRVSAIASSFR 411
           IHP  PR+ ++ ++++
Sbjct: 160 IHPGDPRIKSVVTAYK 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,541
Number of Sequences: 438
Number of extensions: 3671
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)