Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B06
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   171   1e-43
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   171   1e-43
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    42   9e-05

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  171 bits (416), Expect = 1e-43
 Identities = 77/104 (74%), Positives = 90/104 (86%)
 Frame = +1

Query: 91  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 270
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 271 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAG 402
           QPNSAIRKCVRVQLIKNGKKVTAFVP DG LN ++ENDEVL +G
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSG 104


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  171 bits (416), Expect = 1e-43
 Identities = 77/104 (74%), Positives = 90/104 (86%)
 Frame = +1

Query: 91  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 270
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 271 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAG 402
           QPNSAIRKCVRVQLIKNGKKVTAFVP DG LN ++ENDEVL +G
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSG 104


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 24/65 (36%), Positives = 39/65 (60%)
 Frame = +1

Query: 217 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLX 396
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL 
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 397 AGIRS 411
            G R+
Sbjct: 104 RGGRA 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,338
Number of Sequences: 5004
Number of extensions: 38309
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)