Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B06
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...   175   5e-44
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...   170   1e-42
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...   144   1e-34
04_01_0440 + 5746474-5746662,5746895-5747251                           28   8.6  

>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score =  175 bits (425), Expect = 5e-44
 Identities = 88/150 (58%), Positives = 101/150 (67%)
 Frame = +1

Query: 76  CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 255
           C ++ MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224

Query: 256 GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIRS*XSXRXXT 435
           G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DG LN IEENDEVL AG           
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGR-KGHAVGD 283

Query: 436 FPXXRFXGGXKXPXCLXPLS*KEKKXRPRS 525
            P  RF         L  L  KEKK +PRS
Sbjct: 284 IPGVRFKVVKVSGVSLLALF-KEKKEKPRS 312



 Score =  167 bits (405), Expect = 1e-41
 Identities = 85/143 (59%), Positives = 96/143 (67%)
 Frame = +1

Query: 91  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 270
           MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 271 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIRS*XSXRXXTFPXXR 450
           QPNSAIRKC RVQL+KNGKK+ AFVP DG LN IEENDEVL AG            P  R
Sbjct: 60  QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGR-KGHAVGDIPGVR 118

Query: 451 FXGGXKXPXCLXPLS*KEKKXRP 519
           F         L  L  KEKK +P
Sbjct: 119 FKVVKVSGVSLLALF-KEKKEKP 140


>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score =  170 bits (414), Expect = 1e-42
 Identities = 87/145 (60%), Positives = 98/145 (67%)
 Frame = +1

Query: 91  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 270
           MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 271 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIRS*XSXRXXTFPXXR 450
           QPNSAIRKC RVQL+KNGKK+ AFVP DG LN IEENDEVL AG            P  R
Sbjct: 60  QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGR-KGHAVGDIPGVR 118

Query: 451 FXGGXKXPXCLXPLS*KEKKXRPRS 525
           F         L  L  KEKK +PRS
Sbjct: 119 FKVVKVSGVSLLALF-KEKKEKPRS 142


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score =  144 bits (348), Expect = 1e-34
 Identities = 66/103 (64%), Positives = 77/103 (74%)
 Frame = +1

Query: 97  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 276
           K  G+   RK   HRR QRWADK +KK+H G +WK  PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74  KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132

Query: 277 NSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGI 405
           NSAI KC RVQL+KNGKK+ AFVP DG LN I+EN+     GI
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDGI 175


>04_01_0440 + 5746474-5746662,5746895-5747251
          Length = 181

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 150 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 248
           A+GG      P GY+ +G PF  C    KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,670,439
Number of Sequences: 37544
Number of extensions: 293432
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)