Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B06
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              183   2e-46
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               99   2e-21
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         37   0.019
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)                      32   0.71 
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   8.8  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  183 bits (445), Expect = 2e-46
 Identities = 84/102 (82%), Positives = 93/102 (91%)
 Frame = +1

Query: 97  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 276
           KPRG+RTARK  +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQP
Sbjct: 2   KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61

Query: 277 NSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAG 402
           NSAIRKCVRVQLIKNGKK+TAFVP DG LN+IEENDEVL +G
Sbjct: 62  NSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISG 103


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =   99 bits (238), Expect = 2e-21
 Identities = 56/93 (60%), Positives = 61/93 (65%)
 Frame = +1

Query: 247 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIRS*XSXR 426
           ++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DG LN+IEENDEVL +G        
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGR-RGHA 111

Query: 427 XXTFPXXRFXGGXKXPXCLXPLS*KEKKXRPRS 525
               P  RF         L  L  KEKK RPRS
Sbjct: 112 VGDIPGVRFKVVKVANVSLLALF-KEKKERPRS 143


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 20/60 (33%), Positives = 35/60 (58%)
 Frame = +1

Query: 232 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIRS 411
           KG+ ++    + K+PNSA RKC  ++L  NGK ++A++P  G    ++E+  V+     S
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP--GERGQLQEHGVVIFEAAES 286


>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
          Length = 488

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
 Frame = -2

Query: 314 MSCTRTHLRMAELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHR 150
           M C   +    E+ C    PT  R     T     DA P GL  H   M   L+  +  R
Sbjct: 58  MPCQLDYPNYREMPCQLDCPTTERCPANWTTQLQRDALPTGLPKHR-EMPCQLDYPTTER 116

Query: 149 CSRRWFTCLRAVRIPRGLP 93
           C   W T L+   +P GLP
Sbjct: 117 CPANWTTQLQRDALPTGLP 135



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -2

Query: 281 ELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 117
           E+ C    PT  R     T     DA P GL  ++  M   L+  +  RC   W T L+ 
Sbjct: 139 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMSCQLDYPTTERCPANWTTQLQR 197

Query: 116 VRIPRGLP 93
             +P GLP
Sbjct: 198 DTLPTGLP 205



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -2

Query: 281 ELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 117
           E+ C    PT  R     T     DA P GL  ++  M   L+  +  RC   W T L+ 
Sbjct: 104 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMPCQLDYPTTERCPANWTTQLQR 162

Query: 116 VRIPRGLP 93
             +P GLP
Sbjct: 163 DALPTGLP 170


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 177 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 275
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 245  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 150
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,323,090
Number of Sequences: 59808
Number of extensions: 322906
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)