BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fdpeP02_F_B06 (888 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 183 2e-46 SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 99 2e-21 SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12) 37 0.019 SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1) 32 0.71 SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0 SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 28 8.8 >SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) Length = 413 Score = 183 bits (445), Expect = 2e-46 Identities = 84/102 (82%), Positives = 93/102 (91%) Frame = +1 Query: 97 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 276 KPRG+RTARK +HRR+Q+W DK +KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQP Sbjct: 2 KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61 Query: 277 NSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAG 402 NSAIRKCVRVQLIKNGKK+TAFVP DG LN+IEENDEVL +G Sbjct: 62 NSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISG 103 >SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) Length = 143 Score = 99 bits (238), Expect = 2e-21 Identities = 56/93 (60%), Positives = 61/93 (65%) Frame = +1 Query: 247 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIRS*XSXR 426 ++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DG LN+IEENDEVL +G Sbjct: 53 QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGR-RGHA 111 Query: 427 XXTFPXXRFXGGXKXPXCLXPLS*KEKKXRPRS 525 P RF L L KEKK RPRS Sbjct: 112 VGDIPGVRFKVVKVANVSLLALF-KEKKERPRS 143 >SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12) Length = 302 Score = 37.1 bits (82), Expect = 0.019 Identities = 20/60 (33%), Positives = 35/60 (58%) Frame = +1 Query: 232 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIRS 411 KG+ ++ + K+PNSA RKC ++L NGK ++A++P G ++E+ V+ S Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP--GERGQLQEHGVVIFEAAES 286 >SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1) Length = 488 Score = 31.9 bits (69), Expect = 0.71 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Frame = -2 Query: 314 MSCTRTHLRMAELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHR 150 M C + E+ C PT R T DA P GL H M L+ + R Sbjct: 58 MPCQLDYPNYREMPCQLDCPTTERCPANWTTQLQRDALPTGLPKHR-EMPCQLDYPTTER 116 Query: 149 CSRRWFTCLRAVRIPRGLP 93 C W T L+ +P GLP Sbjct: 117 CPANWTTQLQRDALPTGLP 135 Score = 29.1 bits (62), Expect = 5.0 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Frame = -2 Query: 281 ELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 117 E+ C PT R T DA P GL ++ M L+ + RC W T L+ Sbjct: 139 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMSCQLDYPTTERCPANWTTQLQR 197 Query: 116 VRIPRGLP 93 +P GLP Sbjct: 198 DTLPTGLP 205 Score = 28.7 bits (61), Expect = 6.6 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Frame = -2 Query: 281 ELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 117 E+ C PT R T DA P GL ++ M L+ + RC W T L+ Sbjct: 104 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMPCQLDYPTTERCPANWTTQLQR 162 Query: 116 VRIPRGLP 93 +P GLP Sbjct: 163 DALPTGLP 170 >SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 468 Score = 29.1 bits (62), Expect = 5.0 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +3 Query: 177 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 275 S HG MEG P W +S G P+ S C S +A Sbjct: 85 SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117 >SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) Length = 943 Score = 28.3 bits (60), Expect = 8.8 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%) Frame = -2 Query: 245 RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 150 R +PF+ APPKG F VP+W +F N S+ HR Sbjct: 902 RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,323,090 Number of Sequences: 59808 Number of extensions: 322906 Number of successful extensions: 626 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 560 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 623 length of database: 16,821,457 effective HSP length: 82 effective length of database: 11,917,201 effective search space used: 2538363813 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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