Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_B06
(888 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 187 4e-47
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 187 4e-47
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 187 4e-47
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 46 2e-04
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 46 2e-04
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 46 2e-04
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 46 2e-04
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 46 2e-04
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 46 2e-04
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 40 0.016
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 187 bits (456), Expect = 4e-47
Identities = 98/145 (67%), Positives = 106/145 (73%)
Frame = +1
Query: 91 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 270
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 271 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIRS*XSXRXXTFPXXR 450
QPNSAIRKCVRVQLIKNGKK+TAFVP DG LN IEENDEVL AG P R
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGR-KGHAVGDIPGVR 119
Query: 451 FXGGXKXPXCLXPLS*KEKKXRPRS 525
F L L K KK RPRS
Sbjct: 120 FKVVKVANVSLLALY-KGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 187 bits (456), Expect = 4e-47
Identities = 98/145 (67%), Positives = 106/145 (73%)
Frame = +1
Query: 91 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 270
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 271 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIRS*XSXRXXTFPXXR 450
QPNSAIRKCVRVQLIKNGKK+TAFVP DG LN IEENDEVL AG P R
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGR-KGHAVGDIPGVR 119
Query: 451 FXGGXKXPXCLXPLS*KEKKXRPRS 525
F L L K KK RPRS
Sbjct: 120 FKVVKVANVSLLALY-KGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 187 bits (456), Expect = 4e-47
Identities = 98/145 (67%), Positives = 106/145 (73%)
Frame = +1
Query: 91 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 270
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 271 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIRS*XSXRXXTFPXXR 450
QPNSAIRKCVRVQLIKNGKK+TAFVP DG LN IEENDEVL AG P R
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGR-KGHAVGDIPGVR 119
Query: 451 FXGGXKXPXCLXPLS*KEKKXRPRS 525
F L L K KK RPRS
Sbjct: 120 FKVVKVANVSLLALY-KGKKERPRS 143
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 46.0 bits (104), Expect = 2e-04
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1
Query: 199 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEE 378
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 379 NDEVLXAGIRS 411
+ VL G R+
Sbjct: 105 HQIVLVEGGRT 115
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 46.0 bits (104), Expect = 2e-04
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1
Query: 199 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEE 378
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 379 NDEVLXAGIRS 411
+ VL G R+
Sbjct: 105 HQIVLVEGGRT 115
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 46.0 bits (104), Expect = 2e-04
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1
Query: 199 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEE 378
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 379 NDEVLXAGIRS 411
+ VL G R+
Sbjct: 105 HQIVLVEGGRT 115
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 46.0 bits (104), Expect = 2e-04
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1
Query: 199 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEE 378
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 379 NDEVLXAGIRS 411
+ VL G R+
Sbjct: 105 HQIVLVEGGRT 115
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 46.0 bits (104), Expect = 2e-04
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1
Query: 199 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEE 378
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 379 NDEVLXAGIRS 411
+ VL G R+
Sbjct: 105 HQIVLVEGGRT 115
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 46.0 bits (104), Expect = 2e-04
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1
Query: 199 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEE 378
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 379 NDEVLXAGIRS 411
+ VL G R+
Sbjct: 105 HQIVLVEGGRT 115
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 39.5 bits (88), Expect = 0.016
Identities = 28/61 (45%), Positives = 28/61 (45%)
Frame = +1
Query: 340 FVPRDGXLNHIEENDEVLXAGIRS*XSXRXXTFPXXRFXGGXKXPXCLXPLS*KEKKXRP 519
FVP DG LN IEENDEVL AG P RF L L K KK RP
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGR-KGHAVGDIPGVRFKVVKVANVSLLALY-KGKKERP 58
Query: 520 R 522
R
Sbjct: 59 R 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,209,542
Number of Sequences: 237096
Number of extensions: 1485085
Number of successful extensions: 3014
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3014
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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