Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B06
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.6  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
 Frame = +1

Query: 112 RTARKHVNHRRE----QRWADKEFKKAH--MGTKWKANPFGGASHAKGIVLEKVGVEAKQ 273
           RT  + + +RRE    Q+  ++E++K    M  +++       +H K +VLE+   ++K 
Sbjct: 30  RTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSKS 89

Query: 274 PNSAIR 291
           P S  R
Sbjct: 90  PESRDR 95


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 215 PKGLAFHFVPMWAFLNSLSA 156
           PK +A H++  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 215 PKGLAFHFVPMWAFLNSLSA 156
           PK +A H++  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 215 PKGLAFHFVPMWAFLNSLSA 156
           PK +A H++  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 274 PNSAIRKCV 300
           PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,978
Number of Sequences: 438
Number of extensions: 2651
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)