Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B06
         (888 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   165   3e-41
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   157   1e-38
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    29   4.1  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   9.5  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   9.5  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  165 bits (402), Expect = 3e-41
 Identities = 86/145 (59%), Positives = 98/145 (67%)
 Frame = +1

Query: 91  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 270
           MGK RG+   RK    R  QRWADK++KK+H+G +WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 271 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIRS*XSXRXXTFPXXR 450
           QPNSAIRKC RVQLIKNGKK+ AFVP DG LN+IEENDEVL AG            P  R
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVR 118

Query: 451 FXGGXKXPXCLXPLS*KEKKXRPRS 525
           F         L  L  KEKK +PRS
Sbjct: 119 FKVVKVSGVSLLALF-KEKKEKPRS 142


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  157 bits (380), Expect = 1e-38
 Identities = 84/145 (57%), Positives = 95/145 (65%)
 Frame = +1

Query: 91  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 270
           MGK RG+   RK    R  QRWADK +KK++ G +WK  PF  +SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59

Query: 271 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIRS*XSXRXXTFPXXR 450
           QPNSAIRKC RVQLIKNGKK+ AFVP DG LN+IEENDEVL AG            P  R
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVR 118

Query: 451 FXGGXKXPXCLXPLS*KEKKXRPRS 525
           F         L  L  KEKK +PRS
Sbjct: 119 FKVVKVSGVSLLALF-KEKKEKPRS 142


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +1

Query: 268 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGXLNHIEENDEVLXAGIR 408
           K+PNSA RK  +V+L  N   + A +P +G  ++ +E+  VL  G R
Sbjct: 43  KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRGGR 86


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 154 WADKEFKKAHMGTKWKANPFGGASHAKG 237
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 154 WADKEFKKAHMGTKWKANPFGGASHAKG 237
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,396,530
Number of Sequences: 28952
Number of extensions: 216490
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)