Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B05
         (946 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                169   3e-42
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     30   2.4  
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)                      29   4.1  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      28   9.6  

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score =  169 bits (411), Expect = 3e-42
 Identities = 76/103 (73%), Positives = 90/103 (87%), Gaps = 1/103 (0%)
 Frame = +2

Query: 80  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 259
           ML+PK+NRV IYEYLFKEGV VAKKD+++PKHT++E +PNL VIKA+QSLKSRGYV+E+F
Sbjct: 1   MLIPKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKF 60

Query: 260 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV-RTETVR 385
            W+H+YW LTNEGI YLR FLHLP EIVPATL+R V R ET R
Sbjct: 61  CWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTRAETAR 103


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 450 RTPAAPGVAPHDK-KADVGPGS 512
           +TPA PG+AP D  K  VGPG+
Sbjct: 365 KTPALPGIAPSDALKGTVGPGN 386


>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
          Length = 585

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 459 AAPGVAPHDKKADVGP 506
           A PG+APHDKK+  GP
Sbjct: 545 ARPGLAPHDKKSGKGP 560


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -2

Query: 537 SLP*IQDQLSLDQHQPFYHEV---QHQGQQEYVCMQICPQQSGLGHQDDQXGPRRTVSVR 367
           S P +Q  +S  Q QP  H++   Q   QQ++   Q+  QQ     Q  Q  P+ + S+ 
Sbjct: 664 SAPQLQSSMSSQQQQPQQHQISAQQQLQQQQHQQQQLLQQQQ---QQQSQMPPQSSQSMT 720

Query: 366 TERLSVAGTISGGRCKN 316
             + +       G+ KN
Sbjct: 721 GGQNNTQSLTGQGQGKN 737


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,127,635
Number of Sequences: 59808
Number of extensions: 413912
Number of successful extensions: 939
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2764790632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)