Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B05
         (946 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   135   3e-32
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   132   2e-31
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   129   2e-30
At1g56050.1 68414.m06436 GTP-binding protein-related similar to ...    29   4.5  
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein...    28   7.8  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  135 bits (327), Expect = 3e-32
 Identities = 58/94 (61%), Positives = 77/94 (81%)
 Frame = +2

Query: 80  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 259
           M++ + NR  I +YLFKEGV+ AKKD++ P+H  +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 260 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKR 361
           AW H+YW+LTNEGI++LR +L+LP EIVPATLK+
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKK 94


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  132 bits (320), Expect = 2e-31
 Identities = 58/97 (59%), Positives = 78/97 (80%)
 Frame = +2

Query: 80  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 259
           M++ + NR  I +YLFKEGV  AKKD++ PKH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 260 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 370
           AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAK 96


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  129 bits (312), Expect = 2e-30
 Identities = 57/97 (58%), Positives = 77/97 (79%)
 Frame = +2

Query: 80  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 259
           M++ + NR  I +YLFKEGV  AKKD++  KH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 260 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 370
           AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAK 96


>At1g56050.1 68414.m06436 GTP-binding protein-related similar to
           GTP-binding protein GI:10176676 from [Bacillus
           halodurans]
          Length = 421

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 432 PQQSGLGHQDDQXGPRRTVSVRTERLSVAGTISGGRCKNILK 307
           PQ +G+ H D + G  R  +V  E    AG+I+  R K +L+
Sbjct: 360 PQAAGVIHSDFEKGFIRAETVAYEDFVTAGSIAAAREKGLLR 401


>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB: AAD17313
           GI:4325282 from [Arabidopsis thaliana]
          Length = 429

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 167 PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 256
           P HT ++ IP+L +I+ + + K++   K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,217
Number of Sequences: 28952
Number of extensions: 289147
Number of successful extensions: 634
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2266029384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)