Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B04
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   210   2e-55
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.7  
SPAC4A8.02c |||conserved protein|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   4.7  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    27   4.7  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   6.2  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   8.2  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  210 bits (513), Expect = 2e-55
 Identities = 107/176 (60%), Positives = 134/176 (76%), Gaps = 2/176 (1%)
 Frame = +1

Query: 322 NKIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTK 501
           +KIRY+SL+DP  LD+ K+L+I+I P+K    L+I DTGIGMTK DL+NNLG IAKSGTK
Sbjct: 44  DKIRYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTK 103

Query: 502 AFMEALQAGADISMIGQFGVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDS 681
            FMEA  +GADISMIGQFGVGFYS+YLVAD+V V SKHNDDEQY+WESSAGGSFTV  D+
Sbjct: 104 QFMEAAASGADISMIGQFGVGFYSAYLVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDT 163

Query: 682 GEPPWSRYKDRP--SRQRGLGRIHGRTQIXEIVKKHSQFIGYPIKLMVEKEREKKL 843
             P   R  +     ++  L  +  +T I + VKKHS+FI YPI+L+V +E EK++
Sbjct: 164 DGPRLLRGTEIRLFMKEDQLQYLEEKT-IKDTVKKHSEFISYPIQLVVTREVEKEV 218



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 22/26 (84%), Positives = 25/26 (96%)
 Frame = +3

Query: 249 IINTFYSNKEIFLRELISNSSDALEQ 326
           IINT YSNKEIFLRELISN+SDAL++
Sbjct: 20  IINTVYSNKEIFLRELISNASDALDK 45



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 194 AEVETFAFQAEIAQLMS 244
           +  ETF F+AEI+QLMS
Sbjct: 2   SNTETFKFEAEISQLMS 18


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -1

Query: 506 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 348
           KA++P F      +  +AL+ PI ++ I    +F+   IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534


>SPAC4A8.02c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 142

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = -3

Query: 819 NHQLDWVANELGMFLYDLXDLGSSMNSAKSSLT*RTIFVPRPRGLTAV--WADCERASCR 646
           N  LD +  E   + +    L       KSSL   ++ VP   G  ++  W D + A  R
Sbjct: 65  NDILDKIVPESAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDIQLAEFR 124

Query: 645 RFPHVLLVV 619
           R PH   +V
Sbjct: 125 RQPHSRTIV 133


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -1

Query: 704 YLDQGGSPLSGRTVNEPPAEDSHTYCSSSLCLE*TVTRSATK*LE*KPTPNCPIMLMSAP 525
           YL++G  P   R   E P        SSS     + T S+++    +P P  P    S+P
Sbjct: 209 YLEEGAKPPFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSP 268


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 305 FIGRFRTKSGMNLSRIRQNSIVAKSCTSRSFPTR---TRALLRSSIPVL 442
           F+ +FR      +   R  SI+A   T R FPTR     A L SS+P +
Sbjct: 3   FMQQFRNLLHPAMKGARNISILAGGGTMRGFPTRNPFNTATLYSSLPTM 51


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 483 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 376
           DG   V  I  G     +DDR+  L+ + NDL+V L
Sbjct: 2   DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 345 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 473
           H S K    +R+   D +  +ER H+  +R+R  YD G F + +
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,574,578
Number of Sequences: 5004
Number of extensions: 76836
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)