Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B04
         (887 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                      139   2e-33
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                   109   4e-24
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       88   1e-17
SB_31229| Best HMM Match : TP2 (HMM E-Value=1.7)                       31   1.6  
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)                        29   5.0  
SB_7669| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)                    29   6.6  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score =  139 bits (337), Expect = 2e-33
 Identities = 67/108 (62%), Positives = 83/108 (76%)
 Frame = +1

Query: 520 QAGADISMIGQFGVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEPPWS 699
           +AGADISMIGQFGVGFYS+YLVA++V V +KHNDDEQY+WES+AGGSFTV+ DSGEP   
Sbjct: 59  KAGADISMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESAAGGSFTVKRDSGEPLGR 118

Query: 700 RYKDRPSRQRGLGRIHGRTQIXEIVKKHSQFIGYPIKLMVEKEREKKL 843
             K     +          +I EIVKKHSQFIGYP+ L+V+KER+K++
Sbjct: 119 GTKIVLYLKEDQTEYLEEKRIKEIVKKHSQFIGYPLSLLVQKERDKEV 166



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 27/65 (41%), Positives = 37/65 (56%)
 Frame = +2

Query: 689 PLGRGTKIVLHVKEDLAEFMEEPKSKRS*RNIPSSLATQSS*WLKKNAKKNCSDDEPEXX 868
           PLGRGTKIVL++KED  E++EE + K   +     +    S  ++K   K  SDDE E  
Sbjct: 115 PLGRGTKIVLYLKEDQTEYLEEKRIKEIVKKHSQFIGYPLSLLVQKERDKEVSDDEEEEE 174

Query: 869 XKEXE 883
            K+ E
Sbjct: 175 EKKDE 179


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score =  109 bits (261), Expect = 4e-24
 Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 5/168 (2%)
 Frame = +1

Query: 325 KIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKA 504
           K+R+  LT     ++   L I I  ++  GT TI D G+GMT+ +L+++LG IAKSG+K 
Sbjct: 100 KVRHFFLTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKV 159

Query: 505 FMEALQAGADIS---MIGQFGVGFYSSYLVADRVTVHSK--HNDDEQYVWESSAGGSFTV 669
           FME L+  A  S   +IGQFGVGFYS+++VAD+V V++K    + + Y W S   GS+  
Sbjct: 160 FMEKLKNEARSSHENIIGQFGVGFYSTFMVADKVDVYTKSYQPNSQGYFWTSDGSGSYEY 219

Query: 670 RPDSGEPPWSRYKDRPSRQRGLGRIHGRTQIXEIVKKHSQFIGYPIKL 813
              +G    ++       +    R   +T + +IV+++S F+G+PI L
Sbjct: 220 AEANGVARGTKLV--LHLKEDCKRFAMKTAVEDIVQRYSNFVGFPIYL 265



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/17 (64%), Positives = 17/17 (100%)
 Frame = +3

Query: 276 EIFLRELISNSSDALEQ 326
           ++F+RE+ISN+SDALE+
Sbjct: 84  QVFIREVISNASDALEK 100


>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 87.8 bits (208), Expect = 1e-17
 Identities = 67/172 (38%), Positives = 86/172 (50%), Gaps = 1/172 (0%)
 Frame = +1

Query: 322 NKIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTK 501
           +KIR  SLTD +  DSG EL IKI  +K    L + DTGIGMTK +L+ NL      GT 
Sbjct: 116 DKIRLMSLTDKTAFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNL------GTI 169

Query: 502 AFMEALQAGADISMIGQFGVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDS 681
           A                       S  +ADRV V SK+NDD+QY+WES A  SF++  D 
Sbjct: 170 A----------------------KSGTIADRVIVTSKNNDDKQYIWESDA-SSFSISEDP 206

Query: 682 GEPPWSRYKDRPSRQRGLGRIHGRTQ-IXEIVKKHSQFIGYPIKLMVEKERE 834
             P   R        +   R +   + I ++VKK+SQFI +PI L   K  E
Sbjct: 207 RGPTLKRGTTISLHLKEEARDYLEPETIKDLVKKYSQFINFPIFLWTSKTTE 258



 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 21/26 (80%), Positives = 24/26 (92%)
 Frame = +3

Query: 249 IINTFYSNKEIFLRELISNSSDALEQ 326
           IIN+ Y NKEIFLRELISNSSDAL++
Sbjct: 92  IINSLYRNKEIFLRELISNSSDALDK 117


>SB_31229| Best HMM Match : TP2 (HMM E-Value=1.7)
          Length = 676

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 673 PDSGEPPWSRYKDRPSRQRGLGRIHGRTQIXEIVKKHS 786
           P   + PW R KD P     + RI  + Q+ E+ ++ S
Sbjct: 35  PSEPKTPWQRSKDSPVHATKMTRITSKAQLDEVSRRES 72


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 703 YKDRPSRQRGLGRIHGRTQIXEIVKKHSQFIGYPI 807
           Y+D P     +G IHG  Q+  I+ K SQ++  P+
Sbjct: 684 YRDPPEYWFMVGNIHGSNQVHGILGKESQYLCKPL 718


>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +1

Query: 355 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 525
           +K+  G+E+   +  ++NE     ++  +G ++ D++ N+G      T++ +E  +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321


>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
          Length = 780

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +3

Query: 378 AVHQDHSQQERGHSYDHRYRYWYDQ----GRFGEQFGNHREIWY*SFHGGSSSRCRHQHD 545
           AV   H+   RGHS+      W       G F + FG+    W    + G+S  CR    
Sbjct: 150 AVGVPHAHSYRGHSFRRGATTWAFHLGIPGEFIQVFGD----WASDAYRGNSL-CRANCQ 204

Query: 546 WTVRCWLLLQ 575
           W +RC ++ Q
Sbjct: 205 WLIRCVVIFQ 214


>SB_7669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 810 LDWVANELGMFLYDLXDLGSSMNSAKSS 727
           LDWV  E G FL ++  L    N AK+S
Sbjct: 43  LDWVLGEYGFFLVEMGSLYDISNFAKTS 70


>SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)
          Length = 433

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 624 VVIVFRVNS-HAVSDQVTGVEANTELSNHADVGTCLKSLHESFSTRFRDGSQIV 466
           +V+  + N+ H ++ QV     + + + H   G CLKSL   F  + RDG   V
Sbjct: 374 IVLSLKFNTGHEMNVQVQSKLYSVKDNTHVTWGACLKSL--DFECKMRDGQSFV 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,562,692
Number of Sequences: 59808
Number of extensions: 585516
Number of successful extensions: 1636
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)