Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B03
         (1200 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HMI9 Cluster: Formin C; n=3; Trypanosoma cruzi|Rep: F...    25   3.3  

>UniRef50_Q1HMI9 Cluster: Formin C; n=3; Trypanosoma cruzi|Rep:
           Formin C - Trypanosoma cruzi strain CL Brener
          Length = 937

 Score = 24.6 bits (51), Expect(3) = 3.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 235 KXTPPPPPPP 206
           K  PPPPPPP
Sbjct: 470 KAGPPPPPPP 479



 Score = 24.2 bits (50), Expect(3) = 3.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 226 PPPPPPPXXXXK 191
           PPPPPPP    K
Sbjct: 491 PPPPPPPSGAKK 502



 Score = 23.4 bits (48), Expect(3) = 3.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 244 KXXKXTPPPPPP 209
           K  K  PPPPPP
Sbjct: 440 KGEKPLPPPPPP 451


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,746,085
Number of Sequences: 1657284
Number of extensions: 3582300
Number of successful extensions: 136562
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71505
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 120758430771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)