Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_B03
(1200 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 26 1.3
04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322... 26 1.3
09_01_0016 - 376742-376883,377973-378964 25 1.8
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856... 25 2.4
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 25 2.6
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 24 3.7
02_03_0279 + 17250347-17252098 24 3.7
05_01_0080 - 535443-535481,535569-535698,536483-536586,536686-53... 24 3.8
06_03_0750 - 24140988-24141037,24141108-24141345,24142158-241422... 24 3.9
05_07_0031 - 27183252-27183317,27183542-27184282 24 4.0
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 24 9.6
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 25.8 bits (54), Expect(2) = 1.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 229 TPPPPPPP 206
TPPPPPPP
Sbjct: 15 TPPPPPPP 22
Score = 24.2 bits (50), Expect(2) = 1.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 226 PPPPPPPXXXXK 191
PPPPPPP K
Sbjct: 17 PPPPPPPPPPAK 28
>04_01_0246 +
3225743-3226473,3226493-3226624,3227580-3227670,
3228617-3229074,3229342-3229864
Length = 644
Score = 25.8 bits (54), Expect(2) = 1.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 229 TPPPPPPP 206
TPPPPPPP
Sbjct: 36 TPPPPPPP 43
Score = 24.2 bits (50), Expect(2) = 1.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 226 PPPPPPPXXXXK 191
PPPPPPP K
Sbjct: 38 PPPPPPPPFSFK 49
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 25.4 bits (53), Expect(2) = 1.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3
Query: 247 KKXXKXTPPPPPPP 206
KK PPPPPPP
Sbjct: 53 KKAPFVAPPPPPPP 66
Score = 24.2 bits (50), Expect(2) = 1.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 226 PPPPPPPXXXXK 191
PPPPPPP K
Sbjct: 64 PPPPPPPQQNGK 75
>03_03_0038 +
13984525-13984917,13985351-13985429,13985535-13985628,
13985712-13985844
Length = 232
Score = 25.0 bits (52), Expect(2) = 2.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 235 KXTPPPPPPP 206
K PPPPPPP
Sbjct: 78 KKPPPPPPPP 87
Score = 24.2 bits (50), Expect(2) = 2.4
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 226 PPPPPPPXXXXK 191
PPPPPPP K
Sbjct: 80 PPPPPPPPKQEK 91
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 24.6 bits (51), Expect(2) = 2.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 247 KKXXKXTPPPPPPP 206
K+ PPPPPPP
Sbjct: 1924 KQPPPHAPPPPPPP 1937
Score = 24.2 bits (50), Expect(2) = 2.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 226 PPPPPPPXXXXK 191
PPPPPPP K
Sbjct: 1932 PPPPPPPPVEGK 1943
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 24.2 bits (50), Expect(2) = 3.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 247 KKXXKXTPPPPPPP 206
K+ PPPPPPP
Sbjct: 104 KRHHHHHPPPPPPP 117
Score = 24.2 bits (50), Expect(2) = 3.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 226 PPPPPPPXXXXK 191
PPPPPPP K
Sbjct: 126 PPPPPPPPPPFK 137
>02_03_0279 + 17250347-17252098
Length = 583
Score = 24.2 bits (50), Expect(2) = 3.7
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -3
Query: 229 TPPPPPPP 206
+PPPPPPP
Sbjct: 123 SPPPPPPP 130
Score = 24.2 bits (50), Expect(2) = 3.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 226 PPPPPPPXXXXK 191
PPPPPPP K
Sbjct: 129 PPPPPPPPLFAK 140
>05_01_0080 -
535443-535481,535569-535698,536483-536586,536686-536903,
537755-537762,538146-538183,538475-538668,539168-539296,
539392-539481,539726-539839,540008-540154,540228-540293,
540876-540987
Length = 462
Score = 24.2 bits (50), Expect(2) = 3.8
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -3
Query: 229 TPPPPPPP 206
+PPPPPPP
Sbjct: 325 SPPPPPPP 332
Score = 24.2 bits (50), Expect(2) = 3.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 226 PPPPPPPXXXXK 191
PPPPPPP K
Sbjct: 327 PPPPPPPSEMRK 338
>06_03_0750 -
24140988-24141037,24141108-24141345,24142158-24142232,
24142345-24142413,24142550-24142581,24143503-24143583,
24143791-24143851,24144135-24144275,24144372-24144563
Length = 312
Score = 24.2 bits (50), Expect(2) = 3.9
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -3
Query: 229 TPPPPPPP 206
+PPPPPPP
Sbjct: 42 SPPPPPPP 49
Score = 24.2 bits (50), Expect(2) = 3.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 226 PPPPPPPXXXXK 191
PPPPPPP K
Sbjct: 45 PPPPPPPSSSSK 56
>05_07_0031 - 27183252-27183317,27183542-27184282
Length = 268
Score = 24.2 bits (50), Expect(2) = 4.0
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -3
Query: 229 TPPPPPPP 206
+PPPPPPP
Sbjct: 116 SPPPPPPP 123
Score = 24.2 bits (50), Expect(2) = 4.0
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 226 PPPPPPPXXXXK 191
PPPPPPP K
Sbjct: 122 PPPPPPPTTTTK 133
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 23.8 bits (49), Expect(2) = 9.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 226 PPPPPPP 206
PPPPPPP
Sbjct: 1180 PPPPPPP 1186
Score = 23.0 bits (47), Expect(2) = 9.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 229 TPPPPPP 209
TPPPPPP
Sbjct: 1168 TPPPPPP 1174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,369,765
Number of Sequences: 37544
Number of extensions: 242555
Number of successful extensions: 18394
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9097
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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