Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B03
         (1200 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK095189-1|BAC04495.1|  634|Homo sapiens protein ( Homo sapiens ...    26   6.0  

>AK095189-1|BAC04495.1|  634|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37870 fis, clone BRSSN2017682, highly similar to
           Mus musculus p300 transcriptional cofactor JMY mRNA. ).
          Length = 634

 Score = 25.8 bits (54), Expect(2) = 6.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 229 TPPPPPPP 206
           TPPPPPPP
Sbjct: 456 TPPPPPPP 463



 Score = 24.2 bits (50), Expect(2) = 6.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 226 PPPPPPPXXXXK 191
           PPPPPPP    K
Sbjct: 465 PPPPPPPLPVAK 476


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,354,688
Number of Sequences: 237096
Number of extensions: 761974
Number of successful extensions: 28881
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14793
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16899192610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)