Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B03
         (1200 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    27   0.40 
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    24   3.1  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    24   8.9  

>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 27.5 bits (58), Expect(2) = 0.40
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -3

Query: 235 KXTPPPPPPP 206
           K TPPPPPPP
Sbjct: 64  KATPPPPPPP 73



 Score = 24.2 bits (50), Expect(2) = 0.40
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 226 PPPPPPPXXXXK 191
           PPPPPPP    K
Sbjct: 85  PPPPPPPPPTLK 96


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 24.2 bits (50), Expect(2) = 3.1
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 229  TPPPPPPP 206
            +PPPPPPP
Sbjct: 1337 SPPPPPPP 1344



 Score = 24.2 bits (50), Expect(2) = 3.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 226  PPPPPPPXXXXK 191
            PPPPPPP    K
Sbjct: 1356 PPPPPPPPTMSK 1367


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 23.8 bits (49), Expect(2) = 8.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 226 PPPPPPP 206
           PPPPPPP
Sbjct: 578 PPPPPPP 584



 Score = 23.0 bits (47), Expect(2) = 8.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 229 TPPPPPP 209
           TPPPPPP
Sbjct: 537 TPPPPPP 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,316,949
Number of Sequences: 27780
Number of extensions: 95779
Number of successful extensions: 4065
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1971
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3297288728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)