Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B03
         (1200 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66960.1 68418.m08442 prolyl oligopeptidase family protein si...    26   0.64 
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family...    26   1.1  
At1g24150.1 68414.m03047 formin homology 2 domain-containing pro...    26   3.9  
At1g20640.2 68414.m02584 RWP-RK domain-containing protein simila...    25   5.0  
At1g20640.1 68414.m02583 RWP-RK domain-containing protein simila...    25   5.0  

>At5g66960.1 68418.m08442 prolyl oligopeptidase family protein
           similar to OpdB [Treponema denticola] GI:13786054;
           contains Pfam profiles PF00326: prolyl oligopeptidase
           family, PF02897: Prolyl oligopeptidase, N-terminal
           beta-propeller domain
          Length = 792

 Score = 26.2 bits (55), Expect(2) = 0.64
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 244 KXXKXTPPPPPPP 206
           K  K  PPPPPPP
Sbjct: 25  KPPKSPPPPPPPP 37



 Score = 24.6 bits (51), Expect(2) = 0.64
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 229 TPPPPPPPXXXXK 191
           +PPPPPPP    K
Sbjct: 29  SPPPPPPPPALPK 41


>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
           protein
          Length = 558

 Score = 25.8 bits (54), Expect(2) = 1.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 229 TPPPPPPP 206
           TPPPPPPP
Sbjct: 260 TPPPPPPP 267



 Score = 24.2 bits (50), Expect(2) = 1.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 226 PPPPPPPXXXXK 191
           PPPPPPP    K
Sbjct: 264 PPPPPPPRPLAK 275


>At1g24150.1 68414.m03047 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 725

 Score = 26.2 bits (55), Expect(2) = 3.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 229 TPPPPPPPXXXXK 191
           TPPPPPPP    K
Sbjct: 242 TPPPPPPPPIPVK 254



 Score = 21.8 bits (44), Expect(2) = 3.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 235 KXTPPPPPPP 206
           K  P PPPPP
Sbjct: 238 KPDPTPPPPP 247


>At1g20640.2 68414.m02584 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 844

 Score = 24.6 bits (51), Expect(2) = 5.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 235 KXTPPPPPP 209
           K TPPPPPP
Sbjct: 651 KTTPPPPPP 659



 Score = 23.0 bits (47), Expect(2) = 5.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 229 TPPPPPPPXXXXK 191
           T PPPPPP    K
Sbjct: 652 TTPPPPPPVQLAK 664


>At1g20640.1 68414.m02583 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 844

 Score = 24.6 bits (51), Expect(2) = 5.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 235 KXTPPPPPP 209
           K TPPPPPP
Sbjct: 651 KTTPPPPPP 659



 Score = 23.0 bits (47), Expect(2) = 5.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 229 TPPPPPPPXXXXK 191
           T PPPPPP    K
Sbjct: 652 TTPPPPPPVQLAK 664


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,155,540
Number of Sequences: 28952
Number of extensions: 103269
Number of successful extensions: 5177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2648
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3054943904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)