Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_B01
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79670.2 68414.m09292 wall-associated kinase, putative simila...    31   1.3  
At1g79670.1 68414.m09291 wall-associated kinase, putative simila...    31   1.3  
At2g16880.1 68415.m01942 pentatricopeptide (PPR) repeat-containi...    28   7.0  

>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 714

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 551 DNIERYMNKYGVF*GYILREIIKKMSCIVFTYTALLIYFEI 429
           D +E ++N+ GV      R I+K M C + T   +L+Y  I
Sbjct: 420 DKVEEFINEVGVLSQINHRNIVKLMGCCLETEVPILVYEHI 460


>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 751

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 551 DNIERYMNKYGVF*GYILREIIKKMSCIVFTYTALLIYFEI 429
           D +E ++N+ GV      R I+K M C + T   +L+Y  I
Sbjct: 457 DKVEEFINEVGVLSQINHRNIVKLMGCCLETEVPILVYEHI 497


>At2g16880.1 68415.m01942 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 743

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 520 PYLFI*RSILSHLKFSTQDSLSFLIEYIKRS 612
           P + + RS+LSH KF+  D+ S L+ YI+ S
Sbjct: 80  PLISVVRSLLSHHKFA--DAKSLLVSYIRTS 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,260,417
Number of Sequences: 28952
Number of extensions: 229512
Number of successful extensions: 333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)