Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A24
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    29   0.87 
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    28   2.0  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    27   4.6  

>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 501 MKLQNSVYMFLGIFQR-SSLSETYSLFN*SYKFRNVVEFCFFENPFFSNIIVNHQF 337
           +KL N + M+   F    +  +TYSL   S +  N+    +F N   SN+I  +Q+
Sbjct: 345 IKLCNHILMYQATFNEVKNFLQTYSLNMLSIEMENIEGSLYFGNAQLSNLICVNQY 400


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +1

Query: 442 RERRPLKDSKKHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYGNDEHAEFLCV 621
           +ER    + KK  Y++LQ   +E  Q +  M D  +   L  I  Q     ++  + L  
Sbjct: 62  KERILALEEKKTNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQKAEDAEQRKKILAE 121

Query: 622 VSRE 633
           + R+
Sbjct: 122 IERD 125


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 31  ESLRFGLWYAMAEHIDCSDFMEENIQKFNNE--RRSSKQWVK 150
           ++L F   + +A H+ C DF   N+Q+ +    R +   W++
Sbjct: 47  KALSFPYDWKLATHVICDDFSSPNVQEGSKRSLRLAKTNWIR 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,034
Number of Sequences: 5004
Number of extensions: 68308
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)