Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A24
         (877 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30940.1 68417.m04393 potassium channel tetramerisation domai...    54   1e-07
At3g09030.1 68416.m01059 potassium channel tetramerisation domai...    53   3e-07
At2g24240.1 68415.m02895 potassium channel tetramerisation domai...    53   3e-07
At5g55000.2 68418.m06850 potassium channel tetramerisation domai...    51   1e-06
At5g55000.1 68418.m06849 potassium channel tetramerisation domai...    51   1e-06
At5g41330.1 68418.m05023 potassium channel tetramerisation domai...    40   0.003
At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family ...    34   0.11 
At5g60140.1 68418.m07539 transcriptional factor B3 family protei...    29   4.1  
At2g27820.1 68415.m03373 prephenate dehydratase family protein         29   5.4  
At1g80630.1 68414.m09462 leucine-rich repeat family protein            29   5.4  

>At4g30940.1 68417.m04393 potassium channel tetramerisation
           domain-containing protein contains Pfam profile PF02214:
           K+ channel tetramerisation domain
          Length = 441

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
 Frame = +1

Query: 133 SKQWVKLNVGGTYFLTTKTTLCR-DPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYFS 309
           S   +K NVGG  F TT TTL     +SF   L  E+ +L     + G   IDR+P  F+
Sbjct: 4   SNDRIKFNVGGRIFETTATTLANAGRDSFFGALFDENWNL----SQPGDLFIDRNPDCFA 59

Query: 310 PVLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVK 426
            +L+ LR G L I  +I E  + +EA FY + + +R  K
Sbjct: 60  VLLDLLRTGDLNIPPNIPERLLHKEAMFYGLIDHLRTAK 98


>At3g09030.1 68416.m01059 potassium channel tetramerisation
           domain-containing protein contains Pfam profile PF02214:
           K+ channel tetramerisation domain
          Length = 460

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
 Frame = +1

Query: 145 VKLNVGGTYFLTTKTTLCRD-PNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYFSPVLN 321
           VKLNVGG  F T  +T+    P+S L  L    S        +    IDRDP  F+ +LN
Sbjct: 10  VKLNVGGEIFETNASTIQSSCPDSLLAALSTSTSH------GSNPVFIDRDPEIFAVILN 63

Query: 322 YLRHGKLVINND--IAEEGVLEEAEFYNITELIRL 420
            LR G+L  N+    +++ +L+EA +Y +  L+RL
Sbjct: 64  LLRTGRLPANSSGVFSKQELLDEAMYYGVESLLRL 98


>At2g24240.1 68415.m02895 potassium channel tetramerisation
           domain-containing protein contains Pfam profile PF02214:
           K+ channel tetramerisation domain
          Length = 441

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 36/116 (31%), Positives = 57/116 (49%)
 Frame = +1

Query: 133 SKQWVKLNVGGTYFLTTKTTLCRDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYFSP 312
           SK  +K NVGG  F TT TTL        +  + +D   +S  +++  + +DR+   F+ 
Sbjct: 4   SKDRIKFNVGGRLFETTATTLANAGRDSFFGALFDDEWNLSPLEDSILF-VDRNSDCFAV 62

Query: 313 VLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKERICLRERRPLKDSKKHV 480
           +L+ LR G L +  +I E  +  EA FY + + +R  K       R  L DS K +
Sbjct: 63  LLDLLRTGDLNVPANIPERLLHREASFYGLLDHVRTAKWGPFDGNRLRLSDSVKGI 118


>At5g55000.2 68418.m06850 potassium channel tetramerisation
           domain-containing protein / pentapeptide
           repeat-containing protein contains Pfam profiles
           PF02214: K+ channel tetramerisation domain, PF00805:
           Pentapeptide repeats (8 copies)
          Length = 298

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
 Frame = +1

Query: 145 VKLNVGGTYFLTTKTTLC-RDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYFSPVLN 321
           V+LN+GG  F TT  TL  R+P+S L  +      +  +  + G   IDRD  +F  +LN
Sbjct: 11  VRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQE-SKKGYVFIDRDGKHFRHILN 69

Query: 322 YLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKE 429
           +LR G +   +D     +L EA++Y +  L   +K+
Sbjct: 70  WLRDGVIPSLSDPDCSELLREADYYQLLGLKDGIKD 105


>At5g55000.1 68418.m06849 potassium channel tetramerisation
           domain-containing protein / pentapeptide
           repeat-containing protein contains Pfam profiles
           PF02214: K+ channel tetramerisation domain, PF00805:
           Pentapeptide repeats (8 copies)
          Length = 290

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
 Frame = +1

Query: 145 VKLNVGGTYFLTTKTTLC-RDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYFSPVLN 321
           V+LN+GG  F TT  TL  R+P+S L  +      +  +  + G   IDRD  +F  +LN
Sbjct: 11  VRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQE-SKKGYVFIDRDGKHFRHILN 69

Query: 322 YLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKE 429
           +LR G +   +D     +L EA++Y +  L   +K+
Sbjct: 70  WLRDGVIPSLSDPDCSELLREADYYQLLGLKDGIKD 105


>At5g41330.1 68418.m05023 potassium channel tetramerisation
           domain-containing protein contains Pfam profile PF02214:
           K+ channel tetramerisation domain
          Length = 458

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = +1

Query: 145 VKLNVGGTYFLTTKTTLCRDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYFSPVLNY 324
           V +NVGG  F TTK TL          L   DS L     ET  + +DRDP  FS +L  
Sbjct: 13  VSINVGGRIFQTTKQTL---------SLAGTDSLLSQLATETTRF-VDRDPDLFSVLLYI 62

Query: 325 LRHGKLVINNDIAE-EGVLEEAEFYNITELI 414
           LR G L   +   +   +++E+ +Y I   +
Sbjct: 63  LRTGNLPARSRAFDVRDLIDESRYYGIESFL 93


>At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family
           protein / PEP carboxylase family protein similar to
           SP|P51059 Phosphoenolpyruvate carboxylase 2 (EC
           4.1.1.31) (PEPCASE) {Zea mays}; contains Pfam profile
           PF00311: phosphoenolpyruvate carboxylase
          Length = 1032

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = +1

Query: 1   TXFPYRXXYRESLRFGLWYAMAEHIDCSDFMEENIQKFNNERRSSKQWVKLNVGGTYFLT 180
           T  P R      + FG        I  +D+M  N+QK N +  S   W K++ G    LT
Sbjct: 345 TQLPARAHLPACIDFGESRHTKFEIATTDYMPPNLQKQNEQDFSESDWEKIDNGSRSGLT 404

Query: 181 TKTTLCRDPNSFLYRLVQEDSDL 249
           ++ +        L R + E+S +
Sbjct: 405 SRGSFSSTSQLLLQRKLFEESQV 427


>At5g60140.1 68418.m07539 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 328

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 235 EDSDLISDRDETGAYLIDRDPTYFSPVLNYLRHGKLVI 348
           ED D + D D+   YL D +  YF+  LN  +  +L I
Sbjct: 212 EDEDDLEDEDDERRYLDDHENPYFTMTLNPKKKSQLHI 249


>At2g27820.1 68415.m03373 prephenate dehydratase family protein
          Length = 424

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 355 DIAEEGVLEEAEFYNITELIRLVKERICLRERRPLKDS 468
           +I E+G+ ++A   N+T  + L +E I  R  RP K S
Sbjct: 278 EILEDGIQDDAS--NVTRFVMLAREPIIPRTDRPFKTS 313


>At1g80630.1 68414.m09462 leucine-rich repeat family protein
          Length = 578

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 136 KQWVKLNVGGTYFLTTKTTLCRDPNSFLYR-LVQEDSDLIS 255
           K  +K+N+ G  F+T K+ +    N  L R ++  D D IS
Sbjct: 163 KGLLKINISGNSFITDKSLIALSQNCLLLREIIFRDCDFIS 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,136,889
Number of Sequences: 28952
Number of extensions: 336078
Number of successful extensions: 833
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)