Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A23
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    32   0.53 
04_04_0176 - 23329589-23331043                                         31   1.2  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           31   1.2  
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     31   1.2  
05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747           29   3.8  
04_03_0904 + 20717005-20718087                                         29   5.0  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +2

Query: 437  PPXXGXGXLGFXPXPPPXXKXPRAXGXGXGXPXPP 541
            PP  G G +G  P PP     P   G   G P PP
Sbjct: 1187 PPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPP 1221


>04_04_0176 - 23329589-23331043
          Length = 484

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/75 (28%), Positives = 25/75 (33%)
 Frame = +2

Query: 614 PXKXPKTXQGPGFXXXXPRPPPPXXKKXKXFXPKSXEXPQPXXKNYKXXPXXXXXKXPXX 793
           P   PKT   PG     P PPPP         P+    P P  K     P     + P  
Sbjct: 58  PTSPPKTPS-PGHSALSPSPPPP---------PRRGPLPDPTAKAEPEPPKPTPQQQPQP 107

Query: 794 LFPXSXPXXGKTXTP 838
           L P + P   +   P
Sbjct: 108 LLPAAKPAPPRASPP 122


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 473 PXPPPXXKXPRAXGXGXGXPXPP 541
           P PPP    P A G G G P PP
Sbjct: 331 PAPPPPAPSPSAAGAGSGPPPPP 353



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +2

Query: 437 PPXXGXGXLGFXPXPPPXXKXPRAXGXGXGXPXPP 541
           P   G G     P PP     PR  G G G P PP
Sbjct: 340 PSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPP 374



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/75 (25%), Positives = 19/75 (25%), Gaps = 2/75 (2%)
 Frame = +2

Query: 464 GFXPXPPPXXKXPRAXGXGXGXPXPPXXXXXXXXXXXXXXKXKKNXXAQG--PXKXPKTX 637
           G  P PP         G G G P PP                       G  P   P   
Sbjct: 299 GHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAP 358

Query: 638 QGPGFXXXXPRPPPP 682
             P      P PPPP
Sbjct: 359 AAPRPPGPGPGPPPP 373


>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/84 (30%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
 Frame = +3

Query: 606 PKXXPKXPKPXRGRVFXXXPXXPPPXXXKKXKXSXPKVXXXPNPX*KITXFXPXXXXXKX 785
           PK  P  PKP  G      P   PP    K K   P     P P        P       
Sbjct: 163 PKPKPSPPKPKPG------PKPKPPKPGPKPKPPKPGPKPKPKP--------PKPGPKPK 208

Query: 786 PXXFFPXPXPXXGKXXPXFP-PFP 854
           P    P P P  G   P +P PFP
Sbjct: 209 PKPPKPGPKPKPGPPQPWWPIPFP 232


>05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747
          Length = 368

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/50 (36%), Positives = 18/50 (36%)
 Frame = +2

Query: 392 GGGGGXXXFXKKKXXPPXXGXGXLGFXPXPPPXXKXPRAXGXGXGXPXPP 541
           GGGGG     K K        G  G  P PP       A G G G   PP
Sbjct: 96  GGGGGGKKKKKNKNKNKNPANGQPG-EPAPPAATAEVAAGGGGGGGSVPP 144


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
 Frame = +2

Query: 665 PRPPPPXXKKXKXFXPKSXEXPQPXXKNYKXXPXXXXXK-XPXXLFPXSXPXXGKTXTPF 841
           P+P PP   K +     +   P P   +YK  P        P    P   P    T TP+
Sbjct: 150 PKPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPY 209

Query: 842 SP 847
           +P
Sbjct: 210 TP 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,704,748
Number of Sequences: 37544
Number of extensions: 394364
Number of successful extensions: 1317
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)