Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A23
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   31   1.6  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           29   5.0  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 20/85 (23%), Positives = 22/85 (25%)
 Frame = +2

Query: 437 PPXXGXGXLGFXPXPPPXXKXPRAXGXGXGXPXPPXXXXXXXXXXXXXXKXKKNXXAQGP 616
           PP        F P PPP    P         P PP                        P
Sbjct: 308 PPPAASEPAAFAPAPPPSQAPPPPKTIPSTLPPPPVPSATSAPPPWATSNSGPKPLMSTP 367

Query: 617 XKXPKTXQGPGFXXXXPRPPPPXXK 691
            + P   + PG       PPPP  K
Sbjct: 368 VQRPPGMRPPGAGNGPGGPPPPWSK 392


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/71 (26%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
 Frame = +2

Query: 473 PXPPPXXKXPRAXGXGXGXPXPPXXXXXXXXXXXXXXKXKKNXXAQGPXKXPKTXQG-PG 649
           P PPP     R      G P PP                       GP   P   +G P 
Sbjct: 327 PPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGRPP 386

Query: 650 FXXXXPRPPPP 682
                P PPPP
Sbjct: 387 SSLGNPPPPPP 397


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/51 (31%), Positives = 17/51 (33%)
 Frame = +2

Query: 389 SGGGGGXXXFXKKKXXPPXXGXGXLGFXPXPPPXXKXPRAXGXGXGXPXPP 541
           + GGGG          PP          P PPP  K P       G P PP
Sbjct: 338 TSGGGGVNPPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPP 388


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 581 PLXPGXGGNPPXXXGXTVXPPPXPXP 504
           P  P  GG PP   G  + PPP P P
Sbjct: 644 PPNPFFGGIPPPPPGGGMFPPPPPPP 669


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/58 (32%), Positives = 20/58 (34%)
 Frame = -2

Query: 540  GGXGXPXPXPXARGFXFXGGGXGXKPKXPXPXXGGXFFFXKXLXXPPPPPEXXKKKXG 367
            GG   P P P        GGG    P  P P  G           PPPPP    +K G
Sbjct: 949  GGNAPPPPPPPGGSAPPPGGGA---PPLPPPPGGSA----PPPPPPPPPPPPPMRKLG 999


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,101,165
Number of Sequences: 59808
Number of extensions: 241140
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)