Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A23
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.63
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.63
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.63
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.83
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.83
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.83
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 30 1.9
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 30 1.9
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 29 5.8
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 5.8
AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical ... 28 7.7
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.63
Identities = 25/110 (22%), Positives = 29/110 (26%)
Frame = +3
Query: 519 GXGNRXPXXXXGVSPXPRXXGXXKKKTXXPKXXPKXPKPXRGRVFXXXPXXPPPXXXKKX 698
G G+ P G P PR T P P P R P PP
Sbjct: 251 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 310
Query: 699 KXSXPKVXXXPNPX*KITXFXPXXXXXKXPXXFFPXPXPXXGKXXPXFPP 848
P+ P P + P + P P P G PP
Sbjct: 311 SLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 360
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.63
Identities = 25/110 (22%), Positives = 29/110 (26%)
Frame = +3
Query: 519 GXGNRXPXXXXGVSPXPRXXGXXKKKTXXPKXXPKXPKPXRGRVFXXXPXXPPPXXXKKX 698
G G+ P G P PR T P P P R P PP
Sbjct: 272 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 331
Query: 699 KXSXPKVXXXPNPX*KITXFXPXXXXXKXPXXFFPXPXPXXGKXXPXFPP 848
P+ P P + P + P P P G PP
Sbjct: 332 SLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 381
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.63
Identities = 25/110 (22%), Positives = 29/110 (26%)
Frame = +3
Query: 519 GXGNRXPXXXXGVSPXPRXXGXXKKKTXXPKXXPKXPKPXRGRVFXXXPXXPPPXXXKKX 698
G G+ P G P PR T P P P R P PP
Sbjct: 257 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 316
Query: 699 KXSXPKVXXXPNPX*KITXFXPXXXXXKXPXXFFPXPXPXXGKXXPXFPP 848
P+ P P + P + P P P G PP
Sbjct: 317 SLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 366
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.83
Identities = 23/63 (36%), Positives = 23/63 (36%)
Frame = -3
Query: 581 PLXPGXGGNPPXXXGXTVXPPPXPXPGXFXFXEGEXXXNPKXLXPXPGGXFFFXKXXXPP 402
P P GG PP G PPP P PG G P P PGG PP
Sbjct: 727 PPPPPPGGLPPITGG----PPPPPPPGGLPPISG----GPPPPPPPPGG----CPPPPPP 774
Query: 401 PXP 393
P P
Sbjct: 775 PPP 777
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/64 (35%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Frame = -3
Query: 578 LXPGXGGNPPXXX--GXTVXPPPXPXPGXFXFXEGEXXXNPKXLXPXPGGXFFFXKXXXP 405
L P GG PP T PPP P PG G P P PGG P
Sbjct: 706 LPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG----GPPP-PPPPGGLPPISGGPPP 760
Query: 404 PPXP 393
PP P
Sbjct: 761 PPPP 764
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.83
Identities = 23/63 (36%), Positives = 23/63 (36%)
Frame = -3
Query: 581 PLXPGXGGNPPXXXGXTVXPPPXPXPGXFXFXEGEXXXNPKXLXPXPGGXFFFXKXXXPP 402
P P GG PP G PPP P PG G P P PGG PP
Sbjct: 727 PPPPPPGGLPPITGG----PPPPPPPGGLPPISG----GPPPPPPPPGG----CPPPPPP 774
Query: 401 PXP 393
P P
Sbjct: 775 PPP 777
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/64 (35%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Frame = -3
Query: 578 LXPGXGGNPPXXX--GXTVXPPPXPXPGXFXFXEGEXXXNPKXLXPXPGGXFFFXKXXXP 405
L P GG PP T PPP P PG G P P PGG P
Sbjct: 706 LPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG----GPPP-PPPPGGLPPISGGPPP 760
Query: 404 PPXP 393
PP P
Sbjct: 761 PPPP 764
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.83
Identities = 23/63 (36%), Positives = 23/63 (36%)
Frame = -3
Query: 581 PLXPGXGGNPPXXXGXTVXPPPXPXPGXFXFXEGEXXXNPKXLXPXPGGXFFFXKXXXPP 402
P P GG PP G PPP P PG G P P PGG PP
Sbjct: 310 PPPPPPGGLPPITGG----PPPPPPPGGLPPISG----GPPPPPPPPGG----CPPPPPP 357
Query: 401 PXP 393
P P
Sbjct: 358 PPP 360
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/64 (35%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Frame = -3
Query: 578 LXPGXGGNPPXXX--GXTVXPPPXPXPGXFXFXEGEXXXNPKXLXPXPGGXFFFXKXXXP 405
L P GG PP T PPP P PG G P P PGG P
Sbjct: 289 LPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG----GPPP-PPPPGGLPPISGGPPP 343
Query: 404 PPXP 393
PP P
Sbjct: 344 PPPP 347
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = +2
Query: 377 FFXXSGGGGGXXXFXKKKXXPPXXGXGXLGFXPXPPPXXKXPR----AXGXGXGXPXP 538
F SGGGGG PP G G P P + PR + G G G P P
Sbjct: 17 FLLPSGGGGGCGC--APPPPPPPCGCGAPALPPLQLPRFELPRLSLPSLGGGCGGPAP 72
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = +2
Query: 377 FFXXSGGGGGXXXFXKKKXXPPXXGXGXLGFXPXPPPXXKXPR----AXGXGXGXPXP 538
F SGGGGG PP G G P P + PR + G G G P P
Sbjct: 17 FLLPSGGGGGCGC--APPPPPPPCGCGAPALPPLQLPRFELPRLSLPSLGGGCGGPAP 72
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Frame = +2
Query: 377 FFXXSGGGGGXXXFXKKKXXPPXXGXGXLGFXPXPPPXXKXPRA-----XGXGXGXPXP 538
F SGGGGG PP G G P P + PR G G G P P
Sbjct: 17 FLLPSGGGGGCGC--APPPPPPPCGCGGPSLPPLQLPRFELPRLSLPSFGGGGCGGPAP 73
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +2
Query: 449 GXGXLGFX-PXPPPXXKXPRAXGXGXGXPXPP 541
G G G P PPP P A G G P PP
Sbjct: 25 GGGGCGCGAPPPPPACAPPPAPACGGGAPPPP 56
>AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical
protein Y50D4C.3 protein.
Length = 605
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 608 QGPXKXPKTXQGPGFXXXXPRPPPPXXKKXKXFXPKSXEXPQPXXKN 748
QGP P+ Q G P PPPP + F ++ + P P N
Sbjct: 476 QGP---PRGGQFHGGSQQGPPPPPPSQHHPRGFQQQAQQNPPPRGNN 519
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,602,774
Number of Sequences: 27780
Number of extensions: 244451
Number of successful extensions: 829
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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