Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A23
(886 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 31 1.3
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 31 1.3
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 1.8
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 3.1
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 29 3.1
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 29 5.4
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 28 9.5
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 28 9.5
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 614 PXKXPKTXQGPGFXXXXPRPPPPXXKKXKXFXPKSXEXPQPXXKN 748
P + PK +GP P+ PPP + F P P P KN
Sbjct: 150 PSRPPKRSRGPPRPPTRPKSPPP---RKSSFPPSRSPPPPPAKKN 191
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 614 PXKXPKTXQGPGFXXXXPRPPPPXXKKXKXFXPKSXEXPQPXXKN 748
P + PK +GP P+ PPP + F P P P KN
Sbjct: 150 PSRPPKRSRGPPRPPTRPKSPPP---RKSSFPPSRSPPPPPAKKN 191
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/83 (25%), Positives = 25/83 (30%)
Frame = +3
Query: 606 PKXXPKXPKPXRGRVFXXXPXXPPPXXXKKXKXSXPKVXXXPNPX*KITXFXPXXXXXKX 785
P P P P V+ P PPP S P P P + P
Sbjct: 434 PVYSPPPPPPPPPPVYSPPPPPPPPPPPPVY--SPPPPPPPPPPPPPVYSPPPPSPPPPP 491
Query: 786 PXXFFPXPXPXXGKXXPXFPPFP 854
P + P P P P + P P
Sbjct: 492 PPVYSPPPPPPPPPPPPVYSPPP 514
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +2
Query: 665 PRPPPPXXKKXKXFXPKSXEXPQPXXKNYKXXPXXXXXKXPXXLFPXSXPXXGKTXTPFS 844
P PPPP + P P P Y P P P P P S
Sbjct: 467 PPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPS 526
Query: 845 P 847
P
Sbjct: 527 P 527
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/58 (25%), Positives = 18/58 (31%)
Frame = +1
Query: 664 PXXPPPXXKKKXKXQXQKXXXPPTPXKKLQXFXPFXXXKXPPXXFSPXPPXXXENXXP 837
P PPP PP P + P PP +SP PP + P
Sbjct: 466 PPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPP 523
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/60 (25%), Positives = 18/60 (30%)
Frame = +1
Query: 664 PXXPPPXXKKKXKXQXQKXXXPPTPXKKLQXFXPFXXXKXPPXXFSPXPPXXXENXXPXF 843
P PPP PP P + P PP +SP PP P +
Sbjct: 451 PPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVY 510
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/63 (33%), Positives = 23/63 (36%)
Frame = +2
Query: 353 KXPXPPXFFFXXSGGGGGXXXFXKKKXXPPXXGXGXLGFXPXPPPXXKXPRAXGXGXGXP 532
+ P PP S GGG + PP G G P PPP P G G P
Sbjct: 650 RVPRPPP----RSAGGGKSTNLPSAR--PPLPGGGPP--PPPPPPGGGPPPPPGGGPPPP 701
Query: 533 XPP 541
PP
Sbjct: 702 PPP 704
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 581 PLXPGXGGNPPXXXGXTVXPPPXPXPG 501
P P GG PP G PPP P PG
Sbjct: 681 PPPPPPGGGPPPPPGGG-PPPPPPPPG 706
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +1
Query: 394 GXGGGXKXFXKKKXPPGXGXRXFGFXXXSPSXKXKXPGXGXGG 522
G G G + F + PG G GF P PG G GG
Sbjct: 9 GPGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGG 51
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/57 (26%), Positives = 19/57 (33%)
Frame = +1
Query: 673 PPPXXKKKXKXQXQKXXXPPTPXKKLQXFXPFXXXKXPPXXFSPXPPXXXENXXPXF 843
PPP K + PP P K+ PP SP PP + P +
Sbjct: 424 PPPPPSSKMSPSVRAYSPPPPPYSKMSPSVRAYPPPPPPSP-SPPPPYVYSSPPPPY 479
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/98 (24%), Positives = 24/98 (24%)
Frame = +3
Query: 561 PXPRXXGXXKKKTXXPKXXPKXPKPXRGRVFXXXPXXPPPXXXKKXKXSXPKVXXXPNPX 740
P P K T P P P V P P K P P P
Sbjct: 74 PCPPPPYTPKPPTVKPPPPPYVKPPPPPTVKPPPPPYVKPPPPPTVKPPPPPTPYTPPPP 133
Query: 741 *KITXFXPXXXXXKXPXXFFPXPXPXXGKXXPXFPPFP 854
T P P P P P P PP P
Sbjct: 134 TPYTPPPPTVKPPPPPVVTPPPPTPTPEAPCPPPPPTP 171
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/61 (24%), Positives = 19/61 (31%)
Frame = +1
Query: 673 PPPXXKKKXKXQXQKXXXPPTPXKKLQXFXPFXXXKXPPXXFSPXPPXXXENXXPXFPLF 852
PPP K + PP P K+ PP + P PP P +
Sbjct: 472 PPPSSKMSPSFRAT----PPPPSSKMSPSVKAYPPPPPPPEYEPSPPPPSSEMSPSVRAY 527
Query: 853 P 855
P
Sbjct: 528 P 528
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,022,545
Number of Sequences: 28952
Number of extensions: 239878
Number of successful extensions: 983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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