Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A22
(982 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0988 + 26642247-26642506,26642790-26642872,26643150-266432... 33 0.35
10_01_0159 - 1807806-1809386 32 0.61
07_03_0394 - 17633753-17636788 32 0.61
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 32 0.61
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 29 4.3
04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348 29 4.3
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 29 4.3
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 29 5.7
06_02_0239 + 13384451-13387124,13387234-13387631 29 7.5
01_06_0710 + 31384519-31385493 29 7.5
10_01_0243 + 2538994-2539193,2539297-2539471,2539568-2539726,254... 28 9.9
04_03_0572 + 17310729-17310746,17312209-17312902,17312991-173134... 28 9.9
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 28 9.9
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 9.9
01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198... 28 9.9
>06_03_0988 +
26642247-26642506,26642790-26642872,26643150-26643238,
26643478-26643551,26643783-26643833,26644512-26644588,
26644694-26645313
Length = 417
Score = 33.1 bits (72), Expect = 0.35
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 357 SERYGDNRYPYSGSACLISRSSTYGGTRNVRATFRRSARQAAP 485
S Y N PY+ +A + S S+ YGG+ T+ S AP
Sbjct: 365 SNSYSGNNIPYAAAAAMTSGSALYGGSTGSNGTWVASNTSTAP 407
>10_01_0159 - 1807806-1809386
Length = 526
Score = 32.3 bits (70), Expect = 0.61
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 637 ECPCRWVTAAACWPRSAPSGARPSRW 560
ECP +WV A AC P S P W
Sbjct: 411 ECPAKWVRAMACSPSSVPDWDSDQGW 436
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 32.3 bits (70), Expect = 0.61
Identities = 34/121 (28%), Positives = 52/121 (42%)
Frame = +3
Query: 267 ETFTNRCTRSLLARFTNVEARIS*VGKIDHSERYGDNRYPYSGSACLISRSSTYGGTRNV 446
E + R+ ++ + RIS + HS+ YP ++SR+ G R V
Sbjct: 71 EAYVYHANRASNSKTCLGKVRISGTSFVSHSDAT-PLHYPLE-KRTILSRARGELGLR-V 127
Query: 447 RATFRRSARQAAPRRGSDAART*SICRFGQAARAIPHSHREGRAPDGAERGQHAAAVTHR 626
T S R +AP + D T + + AA AIP+ +E RA D + QH H+
Sbjct: 128 FLTDDPSVRVSAPGQEFDFISTPTTAQEQVAANAIPNPFQETRA-DQVRQFQHLPKEQHQ 186
Query: 627 H 629
H
Sbjct: 187 H 187
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 32.3 bits (70), Expect = 0.61
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = +3
Query: 411 SRSSTYGGTRNV-RATFRRSARQAAPRRGSDAART*SICRFGQAAR-AIPHSHREGRAP- 581
SRS R++ R+ R S R +P RG + R S+ R R AI + GR+P
Sbjct: 590 SRSPRKNTRRSISRSPVRLSKRSISPVRGGRSRR--SVSRSASPPRRAISPAQNHGRSPS 647
Query: 582 -----DGAERGQHAAAVTHRHGHSRK 644
DG++R + THR+ +R+
Sbjct: 648 RSPSPDGSKRVRRGRGFTHRYSFARQ 673
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 29.5 bits (63), Expect = 4.3
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = +3
Query: 432 GTRNVRATFRRSARQAAPRRGSDAART*SICRFGQAARAIPHSHR 566
G R RA RR RQ APRR A+ ++ R+G A RA S R
Sbjct: 99 GFRLRRARLRR--RQEAPRRAGGASTAAAVRRWGSARRAGRQSTR 141
>04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348
Length = 662
Score = 29.5 bits (63), Expect = 4.3
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Frame = +1
Query: 139 RCKHMVRNSGHSMETTFYDEQYP--------LSGPVEN---LKRPLTLDVGRGGKRSRIA 285
+ KH SGH ++ F + P LS P N LK+ +TL + R + +A
Sbjct: 381 KIKHFKEESGHIIQEYFLSDDVPELIISLQELSAPEYNPIFLKKLITLAMDRKNREKEMA 440
Query: 286 APVLSSPDLQM 318
+ +LSS L++
Sbjct: 441 SALLSSLSLEL 451
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 29.5 bits (63), Expect = 4.3
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 152 WFGIPATAWRPPSMTSNILSAALWKTLKGP*PWMLG-GVGNVHESLHPFSPRQIYK 316
WF ++ W PSM N+L + + P +LG +H L PFS ++Y+
Sbjct: 1806 WFERDSSLWMLPSMNDNLLDHLKGRGV-STIPALLGLSREELHRLLQPFSASELYQ 1860
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 29.1 bits (62), Expect = 5.7
Identities = 24/92 (26%), Positives = 38/92 (41%)
Frame = -3
Query: 578 GSSFTMGVGYRSSGLSKSAYTLRPSGVTASPWCSLSSASTKGRAYISCSSVGATAGNKTX 399
GSS + G G SSG + + SG T + S + S G + S S+ G+ +G +
Sbjct: 261 GSSASSGYGGSSSGSMSGSGSSSSSGSTGMSYGSSGAGSFSGSSSGSNSNAGSMSGANSG 320
Query: 398 XXXXXXXXVTIPF*MINFSNSGDPSFNICKSG 303
+ S+SG S ++ SG
Sbjct: 321 AGSSSSAYGASGSGSNSMSDSGSSSGSVSASG 352
>06_02_0239 + 13384451-13387124,13387234-13387631
Length = 1023
Score = 28.7 bits (61), Expect = 7.5
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 208 LSGPVENLKRPLTLDVGRGGKRSRIAAPVLSSPDLQMLKLGSPELEKLIIQNGM 369
+ G + NLK TLD+ I A ++ L++L L +L+ L+ NG+
Sbjct: 562 IPGTIGNLKGLQTLDLSSNQLSGIIPATLVKMQALRLLNLSMNDLDGLVPNNGI 615
>01_06_0710 + 31384519-31385493
Length = 324
Score = 28.7 bits (61), Expect = 7.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 538 PLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEK 645
P R +PI P VP+ +TPPL P D D +++
Sbjct: 162 PFSRAASPIPVPAP-FVPALKTTPPLLPSDTDEEKR 196
>10_01_0243 +
2538994-2539193,2539297-2539471,2539568-2539726,
2540109-2540205,2540420-2540490,2541196-2541247,
2541778-2541826,2541965-2542102,2542653-2542772,
2542861-2542990
Length = 396
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 186 GGLHAVAGIPNHVFAPNASVSLNSL 112
GGLH + G+P+H+ A S+ SL
Sbjct: 80 GGLHHMLGLPDHILIAAAGDSIESL 104
>04_03_0572 +
17310729-17310746,17312209-17312902,17312991-17313400,
17325755-17326063
Length = 476
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 184 TFYDEQYPLS--GPVENLKRPLTLDVGRGGKRSRIAAPV 294
T Y PL P + RPL D+G GGKR + P+
Sbjct: 378 TSYCRNQPLRLLSPPPHPSRPLQPDLGEGGKRKGVGKPL 416
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 28.3 bits (60), Expect = 9.9
Identities = 20/80 (25%), Positives = 31/80 (38%)
Frame = +3
Query: 429 GGTRNVRATFRRSARQAAPRRGSDAART*SICRFGQAARAIPHSHREGRAPDGAERGQHA 608
G R R R +R A+ D+A + S +R+ P R+ R +
Sbjct: 11 GKRRRGRGRSSRRSRDASSDPDPDSASSPSPSSASSPSRS-PDRRSRSRSSGSKRRKASS 69
Query: 609 AAVTHRHGHSRKDXLERRDR 668
++ HRH H + RR R
Sbjct: 70 SSRRHRHHHHKSSGRSRRSR 89
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 28.3 bits (60), Expect = 9.9
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +3
Query: 537 AARAIPHSHREGRAPDGAERGQHAAAV 617
AA A P HR G A R +HAAAV
Sbjct: 8 AAAATPRRHRHGPATPRRRRRRHAAAV 34
>01_01_0238 -
1976645-1977561,1977649-1977909,1978243-1978275,
1980556-1981345
Length = 666
Score = 28.3 bits (60), Expect = 9.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 305 GEERTGAAIRERFPPRPTSKVRGLLRFSTGPLRGYCSS*KVVS 177
G GA I +++ P S VRG + P+RGY K VS
Sbjct: 155 GNRTMGAYISDKWNSTPPSGVRGNCNSVSVPVRGYYDGMKPVS 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,454,694
Number of Sequences: 37544
Number of extensions: 482141
Number of successful extensions: 1849
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1846
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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