Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A22
         (982 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.002
SB_11001| Best HMM Match : Filaggrin (HMM E-Value=4.4)                 33   0.27 
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.9  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   3.3  
SB_40320| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_44829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_25957| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_45952| Best HMM Match : LEA_5 (HMM E-Value=8.2)                     29   5.8  
SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  
SB_19020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  
SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.6  

>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +1

Query: 295 LSSPDLQMLKLGSPELEKLI--IQNGMVXXXXXXXXXXVLF--PAVAPTEEQEMYARPFV 462
           L SPD  +LKL SP++EK++  +Q+G+                P   PT EQ  Y+R F 
Sbjct: 252 LRSPDFSLLKLASPDIEKMLMSLQSGISASPTPGSLFNSTAHGPVNPPTTEQ--YSRGFT 309

Query: 463 EALDKLHHGEA 495
           EAL  LH  +A
Sbjct: 310 EALQDLHDRQA 320


>SB_11001| Best HMM Match : Filaggrin (HMM E-Value=4.4)
          Length = 136

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 22/80 (27%), Positives = 32/80 (40%)
 Frame = +3

Query: 432 GTRNVRATFRRSARQAAPRRGSDAART*SICRFGQAARAIPHSHREGRAPDGAERGQHAA 611
           G R V+A      R+   RRG    +  +  R G+  R +     EG+    A RG+   
Sbjct: 8   GKRKVKARRGEGKRKVKARRGEGKGKVKA--RQGEGKRKVKARRGEGKGKVKARRGEGKG 65

Query: 612 AVTHRHGHSRKDXLERRDRG 671
            V  R G  ++    RR  G
Sbjct: 66  KVKARQGEGKRKVKARRGEG 85


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 252  CWAGWETFTNRCTRSLLARFTNVEARIS*VGKIDHSERYG-DNRYPYS 392
            C   W+T+TN C     A   N    +  +G+ D   RY   +  PYS
Sbjct: 1802 CGTNWKTYTNECMMRKQACMNNSMVTVRSIGRCDPCVRYDCGSTNPYS 1849


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 226  NLKRPLTLDVGRGGKRSRIAA--PVLSSPDLQMLKLGSPELEK 348
            NL R LTLD+GR   ++R  +   VLSS D + LK    EL K
Sbjct: 1006 NLVRRLTLDIGRRAAKARPDSKNEVLSSRDNEGLKNTQKELNK 1048


>SB_40320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 381 YPYSGSACLISRSSTYGGTRNVRATFRRSARQAAPRRGSDAART 512
           +PY  S+   SRSS  GG +  + T + + R++  + G    +T
Sbjct: 33  HPYPTSSRASSRSSARGGAKTTKTTKKCTTRKSRTQNGDTTTKT 76


>SB_44829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -3

Query: 542 SGLSKSAYTLRPSGVTASPWCSLSSASTKGRA-----YISCSSVGATAGNK 405
           +GL  +   L P+ + A  +  L S S K        YI+C+++GAT G++
Sbjct: 16  NGLKPATRELEPATIRACVYMPLESKSRKDSGHKILQYIACTTLGATTGSE 66


>SB_25957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
 Frame = +1

Query: 175 METTFYDEQYPLSGPVENLK----RPLTLDV-GRGGKRSRIA----APVLSSPDLQMLKL 327
           MET FY+E   LS   +++K     PL L++   G KR   A       L SPD   L +
Sbjct: 1   METAFYEESSLLSSHSKSVKSYDGHPLWLNLYADGTKRDDFAFSDLGDFLRSPD---LGI 57

Query: 328 GSPELEKLI 354
            SP+LE L+
Sbjct: 58  SSPDLENLV 66


>SB_45952| Best HMM Match : LEA_5 (HMM E-Value=8.2)
          Length = 246

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 555 HSHREGRAPDGAERGQHAAAVTHRHGHSRKD 647
           H  R+  + +  +R +H A   HRHG  ++D
Sbjct: 145 HPERKHNSTESVQRDEHHAEDRHRHGEPKRD 175


>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 565 VKDEPQTVPSAASTPPLSPIDMDTQE 642
           ++++ Q VP    TPPL PID+D QE
Sbjct: 109 MEEQSQVVPH---TPPLPPIDLDLQE 131


>SB_19020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 451 RPFVEALDKLHHGEAVTPLGRRVYADLDRPLERYPTPIVKDE---PQTVPSAASTPPLSP 621
           R  ++++D+L HG     +G     + +   E   +P  +DE   P   PS A +PP   
Sbjct: 63  RHHIKSVDELQHGGKYVAIGHVTSPEEEPKSEAALSPRTEDENSSPVNSPSEADSPP--- 119

Query: 622 IDMDTQEK 645
            + DT E+
Sbjct: 120 -EQDTDEE 126


>SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 522 CRFGQAARAIPHSHREGRAPDGAERGQHAAAVTHRHGHSRKDXLER 659
           C    +  A+ HSH   R    A+ G H      RH  SR+  + R
Sbjct: 103 CHTHISRHALSHSHITARTVTLADHGTHCHTHISRHAQSRQQIMAR 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,629,126
Number of Sequences: 59808
Number of extensions: 503432
Number of successful extensions: 1514
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2907797044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)