Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A22
(982 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132862-27|CAB60564.1| 682|Caenorhabditis elegans Hypothetical... 30 2.9
AF016681-6|AAB66175.2| 317|Caenorhabditis elegans Hypothetical ... 30 2.9
U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical p... 29 6.7
AF077542-6|AAC26298.1| 108|Caenorhabditis elegans Hypothetical ... 29 6.7
Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 8.8
Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue... 28 8.8
U97190-7|AAF23185.1| 650|Caenorhabditis elegans Related to yeas... 28 8.8
U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeas... 28 8.8
U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeas... 28 8.8
U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeas... 28 8.8
U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeas... 28 8.8
U29612-3|AAA68802.2| 289|Caenorhabditis elegans Hypothetical pr... 28 8.8
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 8.8
>AL132862-27|CAB60564.1| 682|Caenorhabditis elegans Hypothetical
protein Y73F8A.35 protein.
Length = 682
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 445 YARPFVEALDKLHHGEAVT 501
Y RPF AL++ HHGE +T
Sbjct: 314 YMRPFQNALERPHHGEFIT 332
>AF016681-6|AAB66175.2| 317|Caenorhabditis elegans Hypothetical
protein F22E5.11 protein.
Length = 317
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 490 EAVTPLGRRVYADLDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQE-KXNW 654
EA+ LGR L +E+ TP +P T S ++ PL P D E + +W
Sbjct: 189 EAIARLGREPIPVLPSKIEKTATPPTIGDPVTSSSDSTESPLIPEQPDNNEIQKSW 244
>U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical
protein R05F9.12 protein.
Length = 955
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 569 FTMGVGYRSSGLSKSAYTLRPSGVTASPW 483
F GVGY S Y LR +G ++PW
Sbjct: 56 FKDGVGYNLDSQQGSTYNLRKNGGPSNPW 84
>AF077542-6|AAC26298.1| 108|Caenorhabditis elegans Hypothetical
protein Y57G7A.3a protein.
Length = 108
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 553 PTPIVKDEPQTVPSAASTPPLSPIDMDTQE 642
P PI K QT P+A + P +PI+ E
Sbjct: 51 PNPIKKSSTQTCPTAQTPPAKTPIERSRHE 80
>Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 205 PLSGPVENLKRPLTLDVGRGGKRSRI 282
P GPV+ K+P T+D GR R+++
Sbjct: 34 PTKGPVQPQKKPTTVDNGRRAYRNQV 59
>Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 205 PLSGPVENLKRPLTLDVGRGGKRSRI 282
P GPV+ K+P T+D GR R+++
Sbjct: 34 PTKGPVQPQKKPTTVDNGRRAYRNQV 59
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 162 FRPQHGDHLL*RAISSQRPCGKP*KAPNLGCWAGWETFTNRCTRS 296
FRP D + + +RPC N GCW W+ +++ C++S
Sbjct: 782 FRPCLTDQCSSKHLQEERPCD------NEGCWTNWDEWSS-CSQS 819
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 162 FRPQHGDHLL*RAISSQRPCGKP*KAPNLGCWAGWETFTNRCTRS 296
FRP D + + +RPC N GCW W+ +++ C++S
Sbjct: 782 FRPCLTDQCSSKHLQEERPCD------NEGCWTNWDEWSS-CSQS 819
>Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue
protein.
Length = 897
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 538 PLERYPTPIVKDEPQTVPSAASTP 609
P E P P+V +E +PS A+TP
Sbjct: 429 PEEGNPVPVVSEEEGKIPSVATTP 452
>U97190-7|AAF23185.1| 650|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform b
protein.
Length = 650
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 538 PLERYPTPIVKDEPQTVPSAASTP 609
P E P P+V +E +PS A+TP
Sbjct: 182 PEEGNPVPVVSEEEGKIPSVATTP 205
>U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform d
protein.
Length = 716
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 538 PLERYPTPIVKDEPQTVPSAASTP 609
P E P P+V +E +PS A+TP
Sbjct: 429 PEEGNPVPVVSEEEGKIPSVATTP 452
>U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform c
protein.
Length = 897
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 538 PLERYPTPIVKDEPQTVPSAASTP 609
P E P P+V +E +PS A+TP
Sbjct: 429 PEEGNPVPVVSEEEGKIPSVATTP 452
>U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform e
protein.
Length = 720
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 538 PLERYPTPIVKDEPQTVPSAASTP 609
P E P P+V +E +PS A+TP
Sbjct: 433 PEEGNPVPVVSEEEGKIPSVATTP 456
>U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform a
protein.
Length = 901
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 538 PLERYPTPIVKDEPQTVPSAASTP 609
P E P P+V +E +PS A+TP
Sbjct: 433 PEEGNPVPVVSEEEGKIPSVATTP 456
>U29612-3|AAA68802.2| 289|Caenorhabditis elegans Hypothetical
protein C09B8.4 protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 396 SACLISRSSTYGGTRNV 446
S CL S SSTYGG RN+
Sbjct: 7 SHCLKSSSSTYGGIRNI 23
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 162 FRPQHGDHLL*RAISSQRPCGKP*KAPNLGCWAGWETFTNRCTRS 296
FRP D + + +RPC N GCW W+ +++ C++S
Sbjct: 782 FRPCLTDQCSSKHLQEERPCD------NEGCWTNWDEWSS-CSQS 819
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,033,601
Number of Sequences: 27780
Number of extensions: 359542
Number of successful extensions: 1046
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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