Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A19
         (953 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    54   5e-06
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    53   1e-05
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    46   0.002
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.093
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    38   0.29 
UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer ariet...    36   1.2  
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    35   2.7  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 54.0 bits (124), Expect = 5e-06
 Identities = 30/54 (55%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +1

Query: 481 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQKSG 639
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ  G
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +1

Query: 505 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLT 603
           R   +C  G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 45.6 bits (103), Expect = 0.002
 Identities = 24/40 (60%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = -3

Query: 678 LLAFCSHVLSCXI---P*FLWITVLPPLSELIPLAAAERP 568
           LL     +L+C     P  LWITVLPPLSEL PLAA ERP
Sbjct: 17  LLPVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.093
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 551 ERGSGRAPNTQTASPRALADSLMQ 480
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.3 bits (85), Expect = 0.29
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 479 SALMNRPTXGERRFAYW 529
           +ALMNRPT GERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer
           arietinum|Rep: Reverse transcriptase - Cicer arietinum
           (Chickpea) (Garbanzo)
          Length = 37

 Score = 36.3 bits (80), Expect = 1.2
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +2

Query: 614 NTVIHRNQGIXQERTCE 664
           NTVIH NQGI QERTCE
Sbjct: 21  NTVIHXNQGITQERTCE 37


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 35.1 bits (77), Expect = 2.7
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +2

Query: 284 DPXMIXYIDXFGQTTTXMQ 340
           DP MI YID FGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,494,612
Number of Sequences: 1657284
Number of extensions: 7985183
Number of successful extensions: 17507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17505
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88182286632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)