Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A19
         (953 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical pr...    29   6.5  
Z92829-7|CAB07347.1|  284|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical
           protein F49C5.9 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 105 GPVITNYGIPVIISARIMLIYFVKNKILFLF 197
           GP   NY + + +S+ ++L+YF+   +L  F
Sbjct: 100 GPFAINYRVTLYLSSTVVLLYFMPTMLLLSF 130


>Z92829-7|CAB07347.1|  284|Caenorhabditis elegans Hypothetical
           protein F10A3.11 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +2

Query: 68  KRCSEFAGHTGLRSRDYQLWNTSYYK--CENHVNLFCEK*NFIFIC 199
           K   E  GH  + S D  +W+  Y K  C N   +F    N  F+C
Sbjct: 107 KWIDEAGGHENIISSDGNIWSVEYNKFVCTNGTRMFLR--NSTFVC 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,563,757
Number of Sequences: 27780
Number of extensions: 193742
Number of successful extensions: 398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)