Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A18
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.5  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 429 PNPGSLXEVLIASSTRSGRWNVHHNLDVMKISSLLIV 319
           P+P      +IASS  +G   + ++L +  +SS+L++
Sbjct: 588 PDPXPNTCKVIASSVSAGEEGLGNSLAITALSSILVL 624


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 514 NLSSESFGNRSSPSLKAWGQ 455
           NL  + F N+S P ++ W Q
Sbjct: 42  NLMDKQFKNKSLPVIEIWDQ 61


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 41  FELIGDRRTDRIEHRAPSSKHQASS 115
           F ++ D + DR+E   P     ASS
Sbjct: 602 FVMVSDYKDDRVEQNEPIGCKDASS 626


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 603 NFNRRQIERVLEVAKIKP 656
           N+  R +++VLE  K+KP
Sbjct: 244 NYVYRSVDQVLEDGKLKP 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,526
Number of Sequences: 438
Number of extensions: 3823
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)