Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A17
         (947 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...   132   2e-29
UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11; ...   100   6e-20
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ...    79   1e-13
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    60   8e-08
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    53   1e-05
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4...    52   3e-05
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0...    50   9e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    48   3e-04
UniRef50_A4LA78 Cluster: Putative uncharacterized protein; n=1; ...    44   0.008
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2...    40   0.070
UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4; ...    35   2.6  
UniRef50_Q53075 Cluster: UvrC protein; n=1; Rhodobacter sphaeroi...    34   4.6  
UniRef50_Q51612 Cluster: Putative uncharacterized protein; n=3; ...    34   6.1  
UniRef50_Q6CFH8 Cluster: Yarrowia lipolytica chromosome B of str...    33   8.0  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score =  132 bits (318), Expect = 2e-29
 Identities = 65/98 (66%), Positives = 68/98 (69%)
 Frame = +2

Query: 134 RLLHFSIGSAPLXEHHKNRRSSQRWRNPTGL*RYQAFPPGKLPRCALLFRPCRLPDTCPP 313
           R   FSIGSAPL    K     +           + FP  + P CALLFRPCRLPDTCPP
Sbjct: 12  RRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPL-EAPSCALLFRPCRLPDTCPP 70

Query: 314 FSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPXQP 427
           FSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPP  P
Sbjct: 71  FSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSP 108



 Score = 91.5 bits (217), Expect = 3e-17
 Identities = 60/117 (51%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
 Frame = +3

Query: 141 CIFP*APPPXTSITKIDAQVRGGETRQDYKDTRRFXXXXXXXXXXXXXXXXYRIPVRLSP 320
           C F     P TSITKIDAQVRGGETRQDYKDTRRF                 R+P    P
Sbjct: 14  CRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPC---RLPDTCPP 70

Query: 321 FGKRGAFS*LTL*VSQFGVG-RSLQAGLCART-PRFSPTAAPYPVXIVLSPTR*DTT 485
           F  R A+  L        V  RS        T P FSPTAAPYPV IVLSPTR DTT
Sbjct: 71  FSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPTRKDTT 127


>UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11;
           cellular organisms|Rep: Uncharacterized 9.4 kDa protein
           - Escherichia coli
          Length = 84

 Score =  100 bits (239), Expect = 6e-20
 Identities = 53/71 (74%), Positives = 54/71 (76%), Gaps = 3/71 (4%)
 Frame = +2

Query: 413 PPXQPDRCALSGXYRLESNPVRHDLSPLAAATGNRISRARYVXGATEFL---XVVAYLRA 583
           PP QPDRCALSG YRLESNPVRHDLSPLAAATGNRISRARYV GATEFL       Y R 
Sbjct: 4   PPVQPDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYVGGATEFLKWWPNYGYTRR 63

Query: 584 TLXXQYXGICA 616
           T+     GICA
Sbjct: 64  TV----FGICA 70


>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 37

 Score = 79.4 bits (187), Expect = 1e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 265 MRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 375
           MRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV
Sbjct: 1   MRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 37


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 60.1 bits (139), Expect = 8e-08
 Identities = 32/69 (46%), Positives = 37/69 (53%)
 Frame = -2

Query: 403 HSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQESASRELXRGKRLVSL* 224
           +SPAWSERP P+ DT SVSYEKAPRFPKG++   +          A       K   SL 
Sbjct: 31  YSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQVSGKRQGRNRRAHEGAAGEKSPASLS 90

Query: 223 SCRVSPPLT 197
                PPLT
Sbjct: 91  PVGFRPPLT 99



 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = -1

Query: 494 VAISRVLPGWTQDDXYRIRRSGRAEXGGSCTQPSLERTTYTELRYLQREL*ESATLPEGR 315
           +A  RV PGWTQDD YR  RS RAE G     P+                 ++   P+G+
Sbjct: 1   MAFLRVRPGWTQDDSYRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGK 60

Query: 314 KADRYPVSG-RVGTGERI-EGAXQGETP 237
           KA++  VSG R G   R  EGA   ++P
Sbjct: 61  KAEQ--VSGKRQGRNRRAHEGAAGEKSP 86


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = +3

Query: 165 PXTSITKIDAQVRGGETRQDYKDTRRF 245
           P TSITK DAQ+ GGETRQDYKDTRRF
Sbjct: 58  PLTSITKSDAQISGGETRQDYKDTRRF 84


>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
           Bacteria|Rep: Putative uncharacterized protein 1 -
           Escherichia coli
          Length = 42

 Score = 51.6 bits (118), Expect = 3e-05
 Identities = 25/40 (62%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = -1

Query: 494 VAISRVLPGWTQDDXYRIRRSGRAEXGGSCTQPS-LERTT 378
           +A+ R LPGWTQDD YRIRRSGRAE G     P+  ER T
Sbjct: 1   MALRRALPGWTQDDSYRIRRSGRAERGVRAHSPAWSERPT 40



 Score = 33.5 bits (73), Expect = 8.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -2

Query: 403 HSPAWSERPTPN 368
           HSPAWSERPTPN
Sbjct: 31  HSPAWSERPTPN 42


>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
           CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
           Citrobacter koseri ATCC BAA-895
          Length = 125

 Score = 50.0 bits (114), Expect = 9e-05
 Identities = 23/40 (57%), Positives = 25/40 (62%)
 Frame = +2

Query: 308 PPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPXQP 427
           PPFSL  +     +   GIS RCRSFAPSWAV  NPP  P
Sbjct: 59  PPFSLAGSVALSHSSHSGISARCRSFAPSWAVSKNPPFSP 98



 Score = 39.9 bits (89), Expect = 0.093
 Identities = 37/99 (37%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
 Frame = +3

Query: 198 VRGGETRQDYKDTRRFXXXXXXXXXXXXXXXXYRIPVRLSPFGKRGAFS*LTL*VSQFGV 377
           VR GETRQD K                      RIPV   PF   G+ +      S  G+
Sbjct: 23  VRSGETRQDLKIIT-VSDESLPLALSCSNPAVSRIPV--PPFSLAGSVA--LSHSSHSGI 77

Query: 378 G---RSLQAGLC-ARTPRFSPTAAPYPVXIVLSPTR*DT 482
               RS       ++ P FSPTAAPYPV + LSPTR  T
Sbjct: 78  SARCRSFAPSWAVSKNPPFSPTAAPYPVTVHLSPTRKST 116


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 48.4 bits (110), Expect = 3e-04
 Identities = 21/27 (77%), Positives = 22/27 (81%)
 Frame = +3

Query: 165 PXTSITKIDAQVRGGETRQDYKDTRRF 245
           P TSI K DAQ+ GGETRQDYKD RRF
Sbjct: 90  PLTSIAKSDAQISGGETRQDYKDPRRF 116


>UniRef50_A4LA78 Cluster: Putative uncharacterized protein; n=1;
           Edwardsiella tarda|Rep: Putative uncharacterized protein
           - Edwardsiella tarda
          Length = 99

 Score = 43.6 bits (98), Expect = 0.008
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +3

Query: 390 QAGLCARTPRFSPTAAPYPVXIVLSPTR*DTTYRHWQ 500
           QAG C  +P FSPT  P  V ++L+PT  DT  RHW+
Sbjct: 64  QAGFCTNSP-FSPTITPVQVTVLLNPTLTDTQKRHWR 99


>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
           cellular organisms|Rep: Putative uncharacterized protein
           1 - Escherichia coli
          Length = 47

 Score = 40.3 bits (90), Expect = 0.070
 Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 494 VAISRVLPGWTQDDXYRIRRSGRAEXGGSCTQPS-LERTT 378
           +A  R  PGWTQ + YRIRRS RAE G     P+  ER T
Sbjct: 1   MAFYRAFPGWTQVNSYRIRRSSRAERGVLAYSPAWSERPT 40


>UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4;
           Burkholderia|Rep: Putative uncharacterized protein -
           Burkholderia pseudomallei (strain 668)
          Length = 755

 Score = 35.1 bits (77), Expect = 2.6
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -3

Query: 345 MRKRHASRREKGGQVSGKRQGRN--RRAHRGSXP 250
           +R+R A RR  GG+  G+R+GRN  RR  RG  P
Sbjct: 355 VRRRAAPRRRHGGEWRGRRRGRNRKRRQQRGQRP 388


>UniRef50_Q53075 Cluster: UvrC protein; n=1; Rhodobacter
           sphaeroides|Rep: UvrC protein - Rhodobacter sphaeroides
           (Rhodopseudomonas sphaeroides)
          Length = 117

 Score = 34.3 bits (75), Expect = 4.6
 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 375 HRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHR---GSXPGGNA 238
           HR     A   R+RHA+RR+ GG   G+ Q R  RA R   G  PGG A
Sbjct: 26  HRRPPGEAGQGRQRHAARRDPGG--GGRAQARAARAFRLGQGGGPGGRA 72


>UniRef50_Q51612 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Plasmid
           ColE1
          Length = 96

 Score = 33.9 bits (74), Expect = 6.1
 Identities = 29/72 (40%), Positives = 31/72 (43%)
 Frame = -3

Query: 669 AGSRATNSFSGX*LASAEAQIPXYXXSSVARR*ATTXKNSVXXXXXXXXXXXXXXXXASG 490
           AGSRATNSFS        A    Y  SSVA       +                   ASG
Sbjct: 26  AGSRATNSFSEGNWLQQSADTK-YCPSSVAVVGPLLQELCSTVCAIIALLIRLPVAAASG 84

Query: 489 DKSCLTGLDSRR 454
            K+CLTGLDSRR
Sbjct: 85  VKACLTGLDSRR 96


>UniRef50_Q6CFH8 Cluster: Yarrowia lipolytica chromosome B of strain
           CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
           lipolytica|Rep: Yarrowia lipolytica chromosome B of
           strain CLIB122 of Yarrowia lipolytica - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 779

 Score = 33.5 bits (73), Expect = 8.0
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = -1

Query: 425 AEXGGSCTQPSLERTTYTELRYLQREL*ESATLPEGRKADRYPVS-----GRVGTGERIE 261
           A+    C  P  E+     L+Y ++   E   L E ++A    VS     G V       
Sbjct: 39  AKLKAPCVYPEAEKKIVVSLKYWKKLQDEIQQLKEDKRAAERGVSEGFVDGVVDGAVESA 98

Query: 260 GAXQGETPGIFIVLSGFA 207
           G  +GETPG+ + +SG A
Sbjct: 99  GGTRGETPGVVLGVSGLA 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,168,864
Number of Sequences: 1657284
Number of extensions: 14209215
Number of successful extensions: 33842
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 32333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33811
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 87365783978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)