Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A17
         (947 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC128579-1|AAI28580.1|  702|Homo sapiens SEMA4G protein protein.       27   4.5  
AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.           31   6.1  

>BC128579-1|AAI28580.1|  702|Homo sapiens SEMA4G protein protein.
          Length = 702

 Score = 26.6 bits (56), Expect(2) = 4.5
 Identities = 21/71 (29%), Positives = 25/71 (35%)
 Frame = -3

Query: 321 REKGGQVSGKRQGRNRRAHRGSXPGGNAWYLYSPVGXXXXXXXXXXX*CSXRGAEPMEKC 142
           R   G  S +  GR  + H GS    +AW                   C    A  ME+C
Sbjct: 557 RGNRGCESSRDTGRALQVHMGSMSPPSAWPCVLDGPETRQDLCQPPKPCVHSHAH-MEEC 615

Query: 141 KSLGLQKKPPH 109
            S GLQ   PH
Sbjct: 616 LSAGLQCPHPH 626



 Score = 23.4 bits (48), Expect(2) = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 135 LGLQKKPPHYFWNSSEAEAG 76
           LG+  + PH  W+SS A  G
Sbjct: 640 LGVPSQLPHPIWSSSPAPCG 659


>AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.
          Length = 326

 Score = 31.1 bits (67), Expect = 6.1
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 268 RSPVPTLPLTGYLSAFLPSGSVALSHS 348
           R PV T+P+   L AF   GSV LSHS
Sbjct: 163 RGPVATIPIVLLLKAFPYCGSVVLSHS 189


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,892,223
Number of Sequences: 237096
Number of extensions: 2297203
Number of successful extensions: 12642
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12642
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12492094950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)