Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A17
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   5.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.3  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 256 APSMRSPVPTLPLTG 300
           AP    P+P+LPL G
Sbjct: 468 APCFEEPLPSLPLPG 482


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 339 KRHASRREKGGQVSGKRQGRNRRAH 265
           KR  +++ +G + +     +NRRAH
Sbjct: 39  KRPKTKKSQGSRTTHNELEKNRRAH 63


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 686  TYSVVLPDQELPTLFPGGNWLQQRRRYQXTXXLV*PV 576
            T   + P +ELP +  GGN     + +     LV PV
Sbjct: 1555 TGGTIAPARELPDVNGGGNDEDPMKIFMANLNLVVPV 1591


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,243
Number of Sequences: 438
Number of extensions: 4305
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)