Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A17
         (947 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    29   3.4  
At3g47680.1 68416.m05192 expressed protein contains similarity t...    29   6.0  
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote...    28   7.9  

>At5g58040.1 68418.m07263 fip1 motif-containing protein contains Pfam
            profile PF05182: Fip1 motif
          Length = 1192

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -3

Query: 417  GGFVHTAQLGANDLH--RTEIPTA*AMRKRHASRREKGGQVSGKRQGRNR 274
            G  V T   G ND    R+EIP      KRH      G ++   ++GR +
Sbjct: 1004 GSSVVTGSKGTNDARNCRSEIPHQPNTAKRHKENASSGDEIHDSKRGRTK 1053


>At3g47680.1 68416.m05192 expressed protein contains similarity to
           hypothetical proteins of [Arabidopsis thaliana]
          Length = 302

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +2

Query: 452 YRLESNPVRHDLSPLAAATGNRISRARYVXGATEFLXVVAYLRATLXXQYXGICASAEAS 631
           + LE+NP   D+SP  AA   ++ R R    A E L +V+   A L      +  + +  
Sbjct: 21  HNLETNPYDDDVSPNQAAHTPKVKRERRKWSAGEDLVLVS---AWLNTSKDAVIGNEQKG 77

Query: 632 YXPEKELVALDPATPR 679
           Y     + A   A+P+
Sbjct: 78  YAFWSRIAAYYGASPK 93


>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase (RKL1),
           Arabidopsis thaliana, EMBL:AF084034
          Length = 660

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 265 MRSPVPTLPLTGYLSAFLPSGSVAL 339
           +R    +LP T Y  +FLPS +VAL
Sbjct: 16  LRISTASLPATNYFDSFLPSDAVAL 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,002,223
Number of Sequences: 28952
Number of extensions: 305467
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2275754832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)