Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A16
(939 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P03093 Cluster: Capsid protein VP2; n=217; Polyomavirus... 58 4e-07
UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine pneumot... 50 9e-05
UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine polyoma... 50 9e-05
UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2; ... 48 5e-04
UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|R... 45 0.003
UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Re... 44 0.004
UniRef50_P03098 Cluster: Capsid protein VP2; n=5; Hamster polyom... 44 0.007
UniRef50_P04011 Cluster: Capsid protein VP2; n=9; African green ... 42 0.023
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.052
UniRef50_P03096 Cluster: Capsid protein VP2; n=13; Polyomavirus|... 39 0.16
UniRef50_P13892 Cluster: Capsid protein VP2; n=27; Budgerigar fl... 39 0.16
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 38 0.49
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 35 2.6
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp... 34 6.0
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 6.0
>UniRef50_P03093 Cluster: Capsid protein VP2; n=217;
Polyomavirus|Rep: Capsid protein VP2 - Simian virus 40
(SV40)
Length = 352
Score = 57.6 bits (133), Expect = 4e-07
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = +3
Query: 198 FISGPGSGGGANQRTAPQWMLPLLLGLYGSVTS 296
FI + GGANQRTAPQWMLPLLLGLYGSVTS
Sbjct: 276 FIEKFEAPGGANQRTAPQWMLPLLLGLYGSVTS 308
>UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine
pneumotropic virus|Rep: Capsid protein VP2 - Murine
polyomavirus (strain Kilham) (MPyV)
Length = 341
Score = 50.0 bits (114), Expect = 9e-05
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +3
Query: 177 VSLVFLSFISGPGSGGGANQRTAPQWMLPLLLGLYGSVT 293
VS +++ + PG GANQR+AP WMLPLLLGLYG +T
Sbjct: 260 VSATYVTKVDPPG---GANQRSAPDWMLPLLLGLYGDLT 295
>UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine
polyomavirus|Rep: Capsid protein VP2 - Bovine
polyomavirus (BPyV)
Length = 353
Score = 50.0 bits (114), Expect = 9e-05
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = +3
Query: 156 EKPES*LVSLVFLSFISGPGSGGGANQRTAPQWMLPLLLGLYGSVT 293
EK E + V ++ G+ GGA QR AP W+LPLLLGLYG +T
Sbjct: 251 EKGEEGMKHPVSAEYVEKYGAPGGAEQRVAPDWLLPLLLGLYGDLT 296
>UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2;
Goose hemorrhagic polyomavirus|Rep: Putative
uncharacterized protein - Goose hemorrhagic polyomavirus
Length = 326
Score = 47.6 bits (108), Expect = 5e-04
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +3
Query: 222 GGANQRTAPQWMLPLLLGLYGSV 290
GGANQR AP WMLPL+LGLYG+V
Sbjct: 257 GGANQRAAPDWMLPLILGLYGTV 279
>UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|Rep:
Putative VP2 - Finch polyomavirus
Length = 354
Score = 44.8 bits (101), Expect = 0.003
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +3
Query: 222 GGANQRTAPQWMLPLLLGLYGSVT 293
GGA+QR AP W+LPLLLGLYG +T
Sbjct: 286 GGAHQRHAPDWLLPLLLGLYGDLT 309
>UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Rep:
Putative VP2 - Crow polyomavirus
Length = 333
Score = 44.4 bits (100), Expect = 0.004
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +3
Query: 222 GGANQRTAPQWMLPLLLGLYGSV 290
GGA+QR+ P WMLPL+LGLYG+V
Sbjct: 263 GGAHQRSCPDWMLPLILGLYGTV 285
>UniRef50_P03098 Cluster: Capsid protein VP2; n=5; Hamster
polyomavirus|Rep: Capsid protein VP2 - Hamster
polyomavirus (HaPyV)
Length = 345
Score = 43.6 bits (98), Expect = 0.007
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 222 GGANQRTAPQWMLPLLLGLYGSVT 293
GGA+QR P WMLPL+LGLYG ++
Sbjct: 300 GGAHQRVTPDWMLPLILGLYGDIS 323
>UniRef50_P04011 Cluster: Capsid protein VP2; n=9; African green
monkey polyomavirus|Rep: Capsid protein VP2 -
B-lymphotropic polyomavirus (LPV)
Length = 356
Score = 41.9 bits (94), Expect = 0.023
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +3
Query: 222 GGANQRTAPQWMLPLLLGLYGSVT 293
GGA+QR WMLPL+LGLYG +T
Sbjct: 279 GGAHQRVTQDWMLPLILGLYGDIT 302
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 40.7 bits (91), Expect = 0.052
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +3
Query: 546 SALMNRPTRGERRFAYW 596
+ALMNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03096 Cluster: Capsid protein VP2; n=13;
Polyomavirus|Rep: Capsid protein VP2 - Murine
polyomavirus (strain A2) (MPyV)
Length = 319
Score = 39.1 bits (87), Expect = 0.16
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 228 ANQRTAPQWMLPLLLGLYGSVT 293
++QR P WMLPL+LGLYG +T
Sbjct: 279 SHQRVTPDWMLPLILGLYGDIT 300
>UniRef50_P13892 Cluster: Capsid protein VP2; n=27; Budgerigar
fledgling disease polyomavirus|Rep: Capsid protein VP2 -
Budgerigar fledgling disease virus (BFDV)
Length = 341
Score = 39.1 bits (87), Expect = 0.16
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +3
Query: 222 GGANQRTAPQWMLPLLLGLYGSVT 293
GGA QR A W+LPL+LGLYG +T
Sbjct: 273 GGAMQRHANDWLLPLILGLYGDLT 296
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 37.5 bits (83), Expect = 0.49
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 360 MIRYIDEFGQTTTRMQ 407
MIRYIDEFGQTTTRMQ
Sbjct: 349 MIRYIDEFGQTTTRMQ 364
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 35.1 bits (77), Expect = 2.6
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -1
Query: 594 NTQTASPRALADSLMQ 547
NTQTASPRALADSLMQ
Sbjct: 333 NTQTASPRALADSLMQ 348
>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
factor - Lentisphaera araneosa HTCC2155
Length = 201
Score = 33.9 bits (74), Expect = 6.0
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 429 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 596
+ DA F+ I N +N+++C + +V +VWE + P RG +F YW
Sbjct: 32 DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 6.0
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -2
Query: 509 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 345
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 762,997,779
Number of Sequences: 1657284
Number of extensions: 13556598
Number of successful extensions: 31571
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 30442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31564
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86141029997
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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