Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A15
         (1082 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.092
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.49 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   6.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.092
 Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
 Frame = -2

Query: 613 PPPPPXXXXXXXXXXXXXXXXXFXXXXPPPPPXKXXGGGXFXPPXG--XPPP 464
           PPPPP                      PPPPP     G    PP G   PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 19/70 (27%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
 Frame = -2

Query: 676 PPPPXXXXXXXKKKXXXXXGA-----PPPPPXXXXXXXXXXXXXXXXXFXXXXPPPPPXK 512
           PPPP       + K     G+     PPPPP                      PPPPP  
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP--PPPPPRS 368

Query: 511 XXGGGXFXPP 482
               G   PP
Sbjct: 369 APSTGRQPPP 378


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = -1

Query: 620 GGPPPPPPXXXXXGGGGGXXXFFFFFXXXXPPPPXQXXXGGXFXPPXXGTPP 465
           GGPPPPPP     G G              PPPP     G  +  P     P
Sbjct: 759 GGPPPPPPPPGVAGAGP---------PPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 790 PPPXPPPPXXGGGGXXXY 843
           PPP PPPP    GG   Y
Sbjct: 776 PPPPPPPPAVSAGGSRYY 793



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 790 PPPXPPPPXXGGGG 831
           PPP PPPP   G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 568 PPPPPXXXXXGGGGGGPPXXP 630
           PPPPP      G G  PP  P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 790 PPPXPPPPXXGGGGXXXYF 846
           PPP PPPP     G   Y+
Sbjct: 775 PPPPPPPPPAVSAGGSRYY 793



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 568 PPPPPXXXXXGGGGGGPPXXP 630
           PPPPP     G G   PP  P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 629 GXXGGPPPPPPXXXXXGGGGG 567
           G  GGPPP P      GG GG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGG 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,268
Number of Sequences: 5004
Number of extensions: 34228
Number of successful extensions: 249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 569764052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)