Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A13
         (972 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote...    31   1.2  
At3g19830.1 68416.m02512 C2 domain-containing protein low simila...    29   3.5  
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    29   3.5  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   6.2  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   6.2  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   8.1  
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ...    28   8.1  
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    28   8.1  

>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase (RKL1),
           Arabidopsis thaliana, EMBL:AF084034
          Length = 660

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 650 LVRSPVPTLPLTGYLSAFLPSGSVALL 730
           L+R    +LP T Y  +FLPS +VALL
Sbjct: 15  LLRISTASLPATNYFDSFLPSDAVALL 41


>At3g19830.1 68416.m02512 C2 domain-containing protein low
           similarity to GLUT4 vesicle protein [Rattus norvegicus]
           GI:4193489; contains Pfam profile PF00168: C2 domain
          Length = 666

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 497 KRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQR 595
           K+P  V+R    +FS+G  PL+  +  RR+S+R
Sbjct: 238 KKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRR 270


>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -3

Query: 460 PLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAEKTSH 287
           P+ L IT++PP +     + A++P              + N+L P+  R I   AEK +H
Sbjct: 264 PVKLKITIIPPKARRTIPSEADKPTHTDELN-------FMNKLPPKRRRTIPSEAEKPTH 316

Query: 286 TSTLNLKHKM 257
           T  LN  +K+
Sbjct: 317 TDELNFMNKL 326


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 359  PLPRSLTRCARSFGCGERYQLTQRR 433
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 359  PLPRSLTRCARSFGCGERYQLTQRR 433
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 350 PIRKPPLPARWPIH*CRKNLPHL 282
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 718

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 811 DSHVGDGVXXSQLSDDXHD*DTYSVSYEKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 632
           +S  G         +D  D D Y +S +     R  +  Q SG  + +N   +  ASR K
Sbjct: 353 ESDFGSSSDARSQCNDLSDADLYPLSLDNTQGPRPVRMNQGSGGGRKKNTNQNGQASRSK 412

Query: 631 RLV 623
           ++V
Sbjct: 413 KIV 415


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 497 KRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQR 595
           K+P  V+R    +FS+G  PL+  +  R++S+R
Sbjct: 226 KKPDYVQRVEIKQFSLGDEPLSVRNVERKTSRR 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,055,147
Number of Sequences: 28952
Number of extensions: 316552
Number of successful extensions: 828
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2353558416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)