Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A11
(861 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 388 e-108
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 36 0.032
SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7) 31 1.2
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012) 31 1.6
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7) 29 4.9
SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014) 29 4.9
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 29 4.9
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 4.9
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 29 4.9
SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 6.4
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_56796| Best HMM Match : CITED (HMM E-Value=1.2) 28 8.5
SB_53228| Best HMM Match : CITED (HMM E-Value=2.5) 28 8.5
SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027) 28 8.5
SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038) 28 8.5
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3) 28 8.5
SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8) 28 8.5
SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54) 28 8.5
SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_9870| Best HMM Match : GspM (HMM E-Value=1.9) 28 8.5
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 388 bits (954), Expect = e-108
Identities = 186/215 (86%), Positives = 197/215 (91%)
Frame = +1
Query: 103 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 282
ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64
Query: 283 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 462
RIRELTSVVQKRF PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65 RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124
Query: 463 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 642
FIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P YV+TA RHV LRQGVLGI
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGI 184
Query: 643 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 747
KVKIMLPWD GK GPKKP PD + + EPKDE VP
Sbjct: 185 KVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVP 219
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 36.3 bits (80), Expect = 0.032
Identities = 18/34 (52%), Positives = 19/34 (55%)
Frame = +3
Query: 657 VAVGPARQERPEEATTRPHPGDRAQGRARAPSSR 758
VA GPAR PE TRPHPG GR A +R
Sbjct: 107 VAAGPARITSPEPPATRPHPGRVEAGRRLAKWNR 140
>SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)
Length = 301
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 669 PARQERPEEATTRPHPGDRAQGRARAPSSR 758
PAR PE TRPHPG GR A +R
Sbjct: 42 PARVTSPEPPATRPHPGRVEAGRRLAKWNR 71
>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
Length = 1115
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 669 PARQERPEEATTRPHPGDRAQGRARAPSSR 758
PAR PE TRPHPG GR A +R
Sbjct: 537 PARITSPEPPATRPHPGRVEAGRRLAKWNR 566
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +3
Query: 366 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPW 488
Y+W L + P + ++ Y R + L C+P + W W
Sbjct: 4 YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44
>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
Length = 383
Score = 29.1 bits (62), Expect = 4.9
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +1
Query: 157 EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 318
E+L R++ D YS E +TP +IMA R QSVL ++GR +LT Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230
Query: 319 FNIPEQSVELYA 354
F+ SVE +A
Sbjct: 231 FDDLADSVEQFA 242
>SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)
Length = 988
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +3
Query: 627 RSTRNQGQNHVAVGPA--RQERPEEATTRPHPGDRAQGRARAPSSR 758
+ R + VA PA R PE TRPHPG GR A +R
Sbjct: 801 KQRREPARTPVAALPAAARVTSPEPPATRPHPGRVEAGRRLAKWNR 846
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +1
Query: 187 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 366
GY+ + + S +++ A +++ ++ + +RE +QKRF E+ +Y
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000
Query: 367 TRGLCAIAQA 396
RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.1 bits (62), Expect = 4.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 507 WQAAWSTCQINEVCRWTHDPLW 572
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 501 CIWQAAWSTCQINEVCRWTHDPLWRP 578
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 29.1 bits (62), Expect = 4.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 630 STRNQGQNHVAVGPARQERPEEATTRP 710
+++N + H + PA+QE+PE + +P
Sbjct: 162 TSKNTSRTHKIIAPAKQEKPERYSRKP 188
>SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 669 PARQERPEEATTRPHPGDRAQGRARAPSSR 758
P R PE TRPHPG GR A +R
Sbjct: 185 PPRITSPEPPATRPHPGRVEAGRRLAKWNR 214
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 660 AVGPARQERPEEATTRPHPGDRAQGRA 740
A AR PE TRPHPG GRA
Sbjct: 1497 AARDARITSPEPPATRPHPGRVEAGRA 1523
>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 660 AVGPARQERPEEATTRPHPGDRAQGRARAPSSR 758
A AR PE TRPHPG GR A +R
Sbjct: 820 AARDARITSPEPPATRPHPGRVEAGRRLAKWNR 852
>SB_56796| Best HMM Match : CITED (HMM E-Value=1.2)
Length = 431
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 660 AVGPARQERPEEATTRPHPGDRAQGRARAPSSR 758
A AR PE TRPHPG GR A +R
Sbjct: 42 AARDARITSPEPPATRPHPGRVEAGRRLAKWNR 74
>SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)
Length = 417
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 660 AVGPARQERPEEATTRPHPGDRAQGRARAPSSR 758
A AR PE TRPHPG GR A +R
Sbjct: 168 AARDARITSPEPPATRPHPGRVEAGRRLAKWNR 200
>SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027)
Length = 804
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 672 ARQERPEEATTRPHPGDRAQGRARAPSSR 758
AR PE TRPHPG GR A +R
Sbjct: 604 ARVTSPEPPATRPHPGRVEAGRRLAKWNR 632
>SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038)
Length = 771
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 660 AVGPARQERPEEATTRPHPGDRAQGRARAPSSR 758
A AR PE TRPHPG GR A +R
Sbjct: 386 AARDARITSPEPPATRPHPGRVEAGRRLAKWNR 418
>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 684 RPEEATTRPHPGDRAQGRARAPSSR 758
RPE TRPHPG GR A +R
Sbjct: 546 RPEPPATRPHPGRVEAGRRLAKWNR 570
>SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3)
Length = 220
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 660 AVGPARQERPEEATTRPHPGDRAQGRARAPSSR 758
A AR PE TRPHPG GR A +R
Sbjct: 42 AARDARITSPEPPATRPHPGRVEAGRRLAKWNR 74
>SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8)
Length = 599
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 660 AVGPARQERPEEATTRPHPGDRAQGRARAPSSR 758
A AR PE TRPHPG GR A +R
Sbjct: 425 AARDARITSPEPPATRPHPGRVEAGRRLAKWNR 457
>SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 660 AVGPARQERPEEATTRPHPGDRAQGRARAPSSR 758
A AR PE TRPHPG GR A +R
Sbjct: 284 AARDARITSPEPPATRPHPGRVEAGRRLAKWNR 316
>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
Length = 776
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 618 SQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRARAPSSRP 761
+ T S+R G A P +TRP P A R R+PS P
Sbjct: 320 ANTHSSRTSGMEANTHSSAPSS-PRNRSTRPRPATAASQRERSPSLSP 366
>SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1492
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 672 ARQERPEEATTRPHPGDRAQGRARAPSSR 758
AR PE TRPHPG GR A +R
Sbjct: 1351 ARITSPEPPATRPHPGRVGAGRRLAKWNR 1379
>SB_9870| Best HMM Match : GspM (HMM E-Value=1.9)
Length = 522
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 672 ARQERPEEATTRPHPGDRAQGRARAPSSR 758
AR PE TRPHPG GR A +R
Sbjct: 181 ARVTSPEPPATRPHPGRVEAGRRLAKWNR 209
>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 660 AVGPARQERPEEATTRPHPGDRAQGRARAPSSR 758
A AR PE TRPHPG GR A +R
Sbjct: 781 AAHDARITSPEPPATRPHPGRVEAGRRLAKWNR 813
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,759,197
Number of Sequences: 59808
Number of extensions: 583272
Number of successful extensions: 1907
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1900
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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