Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A11
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 349 2e-96
Z68010-2|CAA92010.2| 433|Caenorhabditis elegans Hypothetical pr... 30 1.8
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 30 1.8
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 30 1.8
AB236333-1|BAE45265.1| 433|Caenorhabditis elegans MBlk-1 Relate... 30 1.8
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 30 2.4
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 3.2
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z31590-7|CAA83463.1| 361|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 9.8
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 9.8
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 9.8
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 9.8
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 28 9.8
U00036-16|AAK29860.1| 233|Caenorhabditis elegans Hypothetical p... 28 9.8
AF143147-1|AAD37862.1| 233|Caenorhabditis elegans R151.8A prote... 28 9.8
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 349 bits (857), Expect = 2e-96
Identities = 165/221 (74%), Positives = 192/221 (86%), Gaps = 1/221 (0%)
Frame = +1
Query: 88 MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 264
MA N N++KK+K V G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1 MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60
Query: 265 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 444
LGE+GRRI+ELTSVVQKRF E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRA
Sbjct: 61 LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120
Query: 445 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 624
CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ A RHV LR
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180
Query: 625 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 747
QGV+GIKVKIMLP+D +G+NGP+ PDH+ + EP++E +P
Sbjct: 181 QGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLP 221
>Z68010-2|CAA92010.2| 433|Caenorhabditis elegans Hypothetical
protein T01C1.2 protein.
Length = 433
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 638 ESRSKSCCRGTSKARTARRSHNQTTSW*QSPRTSPCPFEPTSEVRSL 778
E+ K C T+ A NQ+ S SP S CP P S SL
Sbjct: 215 EAEQKRCVEATAAAALLDAFGNQSDSSSSSPHASMCPSSPDSTNSSL 261
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +3
Query: 594 QHCYQTCASQTRSTRNQGQNHVA 662
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +3
Query: 594 QHCYQTCASQTRSTRNQGQNHVA 662
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>AB236333-1|BAE45265.1| 433|Caenorhabditis elegans MBlk-1 Related
factor-1 protein.
Length = 433
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 638 ESRSKSCCRGTSKARTARRSHNQTTSW*QSPRTSPCPFEPTSEVRSL 778
E+ K C T+ A NQ+ S SP S CP P S SL
Sbjct: 215 EAEQKRCVEATAAAALLDAFGNQSDSSSSSPHASMCPSSPDSTNSSL 261
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
protein C05C10.2b protein.
Length = 1553
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 79 VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 192
+A +I KK F GDG F E E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
protein C05C10.2a protein.
Length = 1551
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 79 VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 192
+A +I KK F GDG F E E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 253 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 372
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 175 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 336
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 175 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 336
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>Z31590-7|CAA83463.1| 361|Caenorhabditis elegans Hypothetical
protein R01H10.6 protein.
Length = 361
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -1
Query: 588 IITRVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKL 412
++TR + +E+IY L TT+ FTTT H + NTI+S + + + K+
Sbjct: 89 LVTRNRGISNEAIYVLAKVSATTTKFEFI--FTTTNPASHSKLFNTISSISRAYETTKM 145
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 9.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 697 PQPDHILVTEPKDEPVPLRADQ 762
P+P+ ++++EP EPVP+ ++
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEE 1668
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 9.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 697 PQPDHILVTEPKDEPVPLRADQ 762
P+P+ ++++EP EPVP+ ++
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEE 1668
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 9.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 697 PQPDHILVTEPKDEPVPLRADQ 762
P+P+ ++++EP EPVP+ ++
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEE 489
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 9.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 697 PQPDHILVTEPKDEPVPLRADQ 762
P+P+ ++++EP EPVP+ ++
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEE 489
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 9.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 697 PQPDHILVTEPKDEPVPLRADQ 762
P+P+ ++++EP EPVP+ ++
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEE 1668
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 9.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 697 PQPDHILVTEPKDEPVPLRADQ 762
P+P+ ++++EP EPVP+ ++
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEE 1668
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 740 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 639
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 740 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 639
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>U00036-16|AAK29860.1| 233|Caenorhabditis elegans Hypothetical
protein R151.10 protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 640 IKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLRADQ 762
IK++++ D + K+G KP PD LVT + VP AD+
Sbjct: 133 IKLQVLSGDDPEVKHG--KPHPDPFLVTMKRFPQVPESADK 171
>AF143147-1|AAD37862.1| 233|Caenorhabditis elegans R151.8A protein
protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 640 IKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLRADQ 762
IK++++ D + K+G KP PD LVT + VP AD+
Sbjct: 133 IKLQVLSGDDPEVKHG--KPHPDPFLVTMKRFPQVPESADK 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,313,281
Number of Sequences: 27780
Number of extensions: 421012
Number of successful extensions: 1351
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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